Author details

Full Name

Bernard de Bono

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37460679	Toxicology knowledge graph for structural birth defects.	Commun Med (Lond)	2023
35547570	Representing Normal and Abnormal Physiology as Routes of Flow in ApiNATOMY.	Front Physiol	2022
36090663	Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project.	Front Neuroinform	2022
34248680	The SPARC DRC: Building a Resource for the Autonomic Nervous System Community.	Front Physiol	2021
33951750	Sialic acid-binding immunoglobulin-like lectin (Sigelac)-15 is a rapidly internalised cell-surface antigen expressed by acute myeloid leukaemia cells.	Br J Haematol	2021
33664662	Knowledge Representation for Multi-Scale Physiology Route Modeling.	Frontiers in Neuroinformatics	2021
31492098	Model annotation and discovery with the Physiome Model Repository.	BMC Bioinformatics	2019
29285348	Meeting the multiscale challenge: representing physiology processes over ApiNATOMY circuits using bond graphs.	Interface Focus	2018
28365743	Automated PDF highlighting to support faster curation of literature for Parkinson's and Alzheimer's disease.	Database (Oxford)	2017
27506597	Roadmap for cardiovascular circulation model.	Journal of Physiology	2016
27051515	The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable.	Interface Focus	2016
27051514	Requirements for the formal representation of pathophysiology mechanisms by clinicians.	Interface Focus	2016
27051513	A physiome interoperability roadmap for personalized drug development.	Interface Focus	2016
26690135	Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.	Int J Mol Sci	2015
25759670	The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units.	Frontiers in Physiology	2015
26311901	TARM1 Is a Novel Leukocyte Receptor Complex-Encoded ITAM Receptor That Costimulates Proinflammatory Cytokine Secretion by Macrophages and Neutrophils.	Journal of Immunology	2015
24882821	Biophysical constraints on the evolution of tissue structure and function.	Journal of Physiology	2014
34541587	Computational Horizons In Cancer (CHIC): Developing Meta- and Hyper-Multiscale Models and Repositories for <i>In Silico</i> Oncology - a Brief Technical Outline of the Project.	Proc 2014 6th Int Adv Res Workshop In Silico Oncol Cancer Investig (2014)	2014
25258084	Transcriptional diversity during lineage commitment of human blood progenitors.	Science	2014
23590598	Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology.	BMC Bioinformatics	2013
24267822	HuPSON: the human physiology simulation ontology.	Journal of Biomedical Semantics	2013
24103658	Functional tissue units and their primary tissue motifs in multi-scale physiology.	Journal of Biomedical Semantics	2013
24427536	A vision and strategy for the virtual physiological human: 2012 update.	Interface Focus	2013
22130590	An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.	Bioinformatics	2012
22887885	Integrating knowledge representation and quantitative modelling in physiology.	Biotechnology Journal	2012
22616108	ApiNATOMY: a novel toolkit for visualizing multiscale anatomy schematics with phenotype-related information.	Human Mutation	2012
21835028	Integrating systems biology models and biomedical ontologies.	BMC Syst Biol	2011
21878109	The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions.	BMC Res Notes	2011
20439264	A vision and strategy for the virtual physiological human in 2010 and beyond.	Philos Trans A Math Phys Eng Sci	2010
20833976	Transcription profiling in human platelets reveals LRRFIP1 as a novel protein regulating platelet function.	Blood	2010
18981052	Reactome knowledgebase of human biological pathways and processes.	Nucleic Acids Res	2009
19429868	A functional genomics approach reveals novel quantitative trait loci associated with platelet signaling pathways.	Blood	2009
19337729	Comparative genomics indicates the mammalian CD33rSiglec locus evolved by an ancient large-scale inverse duplication and suggests all Siglecs share a common ancestral region.	Immunogenetics	2009
19109564	Functional genomics in zebrafish permits rapid characterization of novel platelet membrane proteins.	Blood	2009
19228925	A HaemAtlas: characterizing gene expression in differentiated human blood cells.	Blood	2009
18629938	SIGLEC16 encodes a DAP12-associated receptor expressed in macrophages that evolved from its inhibitory counterpart SIGLEC11 and has functional and non-functional alleles in humans.	European Journal of Immunology	2008
17495011	Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system.	Genome Research	2007
16313355	Relationship between SPRY and B30.2 protein domains. Evolution of a component of immune defence?	Immunology	2005
15608231	Reactome: a knowledgebase of biological pathways.	Nucleic Acids Res	2005
16141072	The transcriptional landscape of the mammalian genome.	Science	2005
15780753	IRIS: a database surveying known human immune system genes.	Genomics	2005
15313612	VH gene segments in the mouse and human genomes.	Journal of Molecular Biology	2004
14690048	Exploring the immunogenome with bioinformatics.	Seminars in Immunology	2003
14576296	Exegesis: a procedure to improve gene predictions and its use to find immunoglobulin superfamily proteins in the human and mouse genomes.	Nucleic Acids Research	2003