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Author Details

Yasset Perez-Riverol
EMBL's European Bioinformatics Institute (EMBL-EBI)
2008
91
30
PMIDPaper TitleJournal TitlePublished Year
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
38015445EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.Nucleic Acids Res2024
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
36370099The ProteomeXchange consortium at 10 years: 2023 update.Nucleic Acids Res2023
37969874The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020).J Biomol Tech2023
37875519lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation.Nat Commun2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
37488995Tissue-based absolute quantification using large-scale TMT and LFQ experiments.Proteomics2023
37220883LFQ-Based Peptide and Protein Intensity Differential Expression Analysis.J Proteome Res2023
37488995Tissue-based absolute quantification using large-scale TMT and LFQ experiments.Proteomics2023
37875519lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation.Nat Commun2023
37969874The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020).J Biomol Tech2023
37220883LFQ-Based Peptide and Protein Intensity Differential Expression Analysis.J Proteome Res2023
36626722Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work.J Proteome Res2023
36693629ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics.J Proteome Res2023
34723319The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.Nucleic Acids Res2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
36529941Proteomic repository data submission, dissemination, and reuse: key messages.Expert Rev Proteomics2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
34723319The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.Nucleic Acids Res2022
35549218A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics.J Proteome Res2022
36529941Proteomic repository data submission, dissemination, and reuse: key messages.Expert Rev Proteomics2022
35290070Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.J Proteome Res2022
33307250Deep learning embedder method and tool for mass spectra similarity search.J Proteomics2021
33970638Universal Spectrum Explorer: A Standalone (Web-)Application for Cross-Resource Spectrum Comparison.J Proteome Res2021
34239088MaxDIA enables library-based and library-free data-independent acquisition proteomics.Nat Biotechnol2021
33893311An integrated landscape of protein expression in human cancer.Sci Data2021
33625229BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.J Proteome Res2021
33782609User-friendly, scalable tools and workflows for single-cell RNA-seq analysis.Nat Methods2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
33307250Deep learning embedder method and tool for mass spectra similarity search.J Proteomics2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34547032Correction: Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease.PLoS Genet2021
33625229BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.J Proteome Res2021
33782609User-friendly, scalable tools and workflows for single-cell RNA-seq analysis.Nat Methods2021
33893311An integrated landscape of protein expression in human cancer.Sci Data2021
34615866A proteomics sample metadata representation for multiomics integration and big data analysis.Nat Commun2021
34547032Correction: Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease.PLoS Genet2021
34183830Universal Spectrum Identifier for mass spectra.Nat Methods2021
34239088MaxDIA enables library-based and library-free data-independent acquisition proteomics.Nat Biotechnol2021
33970638Universal Spectrum Explorer: A Standalone (Web-)Application for Cross-Resource Spectrum Comparison.J Proteome Res2021
31599373Novel functional proteins coded by the human genome discovered in metastases of melanoma patients.Cell Biol Toxicol2020
31599373Novel functional proteins coded by the human genome discovered in metastases of melanoma patients.Cell Biol Toxicol2020
31686107The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.Nucleic Acids Res2020
31657527Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines.Proteomics2020
32929271MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.Nat Methods2020
32786688Toward a Sample Metadata Standard in Public Proteomics Repositories.J Proteome Res2020
31686107The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics.Nucleic Acids Res2020
31657527Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines.Proteomics2020
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Collaborators

Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 43
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 23
Eric W Deutsch
Institute for Systems Biology
Co-authored papers 15
Rui Wang
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 14
Nuno Bandeira
University of California
Co-authored papers 11
Timo Sachsenberg
Institute for Bioinformatics and Medical Informatics, University of Tubingen
Co-authored papers 11
Tobias Ternent
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 10
Julian Uszkoreit
Ruhr University Bochum
Co-authored papers 10
Mingze Bai
Co-authored papers 8
Oliver Kohlbacher
Max Planck Institute for Developmental Biology
Co-authored papers 7
Noemi Del-Toro
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 7
Felipe da Veiga Leprevost
University of Michigan ann arbor
Co-authored papers 7
Pierre-Alain Binz
Co-authored papers 6
David L Tabb
Co-authored papers 5
Wout Bittremieux
University of Antwerp
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Reza M Salek
Co-authored papers 5
Andrew R Jones
Institute of Systems, University of Liverpool
Co-authored papers 5
Alvis Brazma
European Bioinformatics Institute
Co-authored papers 5
Steffen Neumann
Leibniz Institute for Plant Biochemistry
Co-authored papers 4
F??bio C S Nogueira
Institute of Chemistry, Federal University of Rio de Janeiro
Co-authored papers 4
Magnus Palmblad
Center for Proteomics and Metabolomics, Leiden University Medical Center
Co-authored papers 4
Alexey I Nesvizhskii
University of Michigan ann arbor
Co-authored papers 4
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 4
Lennart Martens
Co-authored papers 4
Gilberto B Domont
Institute of Chemistry, Federal University of Rio de Janeiro
Co-authored papers 4
Markus Müller
Co-authored papers 3
Brendan MacLean
Co-authored papers 3
Irene Papatheodorou
Co-authored papers 3
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 3
Yasushi Ishihama
Graduate School of Pharmaceutical Sciences, Kyoto University
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Release 1.2