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Author Details

Marco A Marra
University of British Columbia
1993
491
124
Antoine Forget (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37326978GRETTA: an R package for mapping in silico genetic interaction and essentiality networks.Bioinformatics2023
37977148A longitudinal single-cell atlas of treatment response in pediatric AML.Cancer Cell2023
37558751Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers.NPJ Precis Oncol2023
37961641Genomic structures and regulation patterns at HPV integration sites in cervical cancer.bioRxiv2023
37551834A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.Biotechniques2023
37345142Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity.Cancers (Basel)2023
37084389Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns.Blood2023
36964191Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration.NPJ Precis Oncol2023
37326978GRETTA: an R package for mapping in silico genetic interaction and essentiality networks.Bioinformatics2023
36945587Relapse timing is associated with distinct evolutionary dynamics in DLBCL.medRxiv2023
37319384Relapse Timing Is Associated With Distinct Evolutionary Dynamics in Diffuse Large B-Cell Lymphoma.J Clin Oncol2023
37298494Oncogenic Viruses and the Epigenome: How Viruses Hijack Epigenetic Mechanisms to Drive Cancer.Int J Mol Sci2023
36982943Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study.Int J Mol Sci2023
37961641Genomic structures and regulation patterns at HPV integration sites in cervical cancer.bioRxiv2023
37558751Chemokine expression predicts T cell-inflammation and improved survival with checkpoint inhibition across solid cancers.NPJ Precis Oncol2023
37551834A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing.Biotechniques2023
37977148A longitudinal single-cell atlas of treatment response in pediatric AML.Cancer Cell2023
37319384Relapse Timing Is Associated With Distinct Evolutionary Dynamics in Diffuse Large B-Cell Lymphoma.J Clin Oncol2023
37084389Genetic subdivisions of follicular lymphoma defined by distinct coding and noncoding mutation patterns.Blood2023
37345142Multi-Omic Analysis of CIC's Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity.Cancers (Basel)2023
36982943Immune Activation following Irbesartan Treatment in a Colorectal Cancer Patient: A Case Study.Int J Mol Sci2023
36945587Relapse timing is associated with distinct evolutionary dynamics in DLBCL.medRxiv2023
37298494Oncogenic Viruses and the Epigenome: How Viruses Hijack Epigenetic Mechanisms to Drive Cancer.Int J Mol Sci2023
36964191Homologous recombination deficiency signatures in gastrointestinal and thoracic cancers correlate with platinum therapy duration.NPJ Precis Oncol2023
34687784Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.J Virol Methods2022
36230545The Drivers, Mechanisms, and Consequences of Genome Instability in HPV-Driven Cancers.Cancers (Basel)2022
35571031Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data.Front Genet2022
35691590Whole-genome and transcriptome analysis enhances precision cancer treatment options.Ann Oncol2022
36209277Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma.Nat Commun2022
36071521TMBur: a distributable tumor mutation burden approach for whole genome sequencing.BMC Med Genomics2022
35483882Whole-genome and transcriptome analysis of advanced adrenocortical cancer highlights multiple alterations affecting epigenome and DNA repair pathways.Cold Spring Harb Mol Case Stud2022
36131014Failure of human rhombic lip differentiation underlies medulloblastoma formation.Nature2022
35787786Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing.Elife2022
35723286Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2.J Appl Lab Med2022
36446943Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.Nature2022
34687784Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents.J Virol Methods2022
35257510The impact of whole genome and transcriptome analysis (WGTA) on predictive biomarker discovery and diagnostic accuracy of advanced malignancies.J Pathol Clin Res2022
34907396Retraction Note: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.Nat Neurosci2022
35205656Cost-Effectiveness of Molecularly Guided Treatment in Diffuse Large B-Cell Lymphoma (DLBCL) in Patients under 60.Cancers (Basel)2022
34843087Early-stage economic analysis of research-based comprehensive genomic sequencing for advanced cancer care.J Community Genet2022
34767259Integrative multi-omic analysis reveals neurodevelopmental gene dysregulation in CIC-knockout and IDH1-mutant cells.J Pathol2022
35140225A platform for oncogenomic reporting and interpretation.Nat Commun2022
35303420Single-cell landscapes of primary glioblastomas and matched explants and cell lines show variable retention of inter- and intratumor heterogeneity.Cancer Cell2022
35723286Automated Library Construction and Analysis for High-Throughput Nanopore Sequencing of SARS-CoV-2.J Appl Lab Med2022
35571031Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data.Front Genet2022
35787786Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing.Elife2022
35691590Whole-genome and transcriptome analysis enhances precision cancer treatment options.Ann Oncol2022
35483882Whole-genome and transcriptome analysis of advanced adrenocortical cancer highlights multiple alterations affecting epigenome and DNA repair pathways.Cold Spring Harb Mol Case Stud2022
36446943Author Correction: Failure of human rhombic lip differentiation underlies medulloblastoma formation.Nature2022
36209277Integrative analysis of KRAS wildtype metastatic pancreatic ductal adenocarcinoma reveals mutation and expression-based similarities to cholangiocarcinoma.Nat Commun2022
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Collaborators

Steven J M Jones
University of British Columbia
Co-authored papers 254
Andrew J Mungall
Co-authored papers 129
Richard A Moore
Co-authored papers 121
Martin Hirst
University of British Columbia
Co-authored papers 92
Yongjun Zhao
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 83
Jacqueline E Schein
Canada British Columbia Cancer Research Centre, University of British Columbia
Co-authored papers 74
Ryan D Morin
Simon Fraser University
Co-authored papers 66
Janessa Laskin
Co-authored papers 65
Yussanne Ma
Co-authored papers 55
Robert A Holt
BC Cancer Research Institute
Co-authored papers 54
Sohrab P Shah
Memorial Sloan Kettering Cancer Center
Co-authored papers 38
Martin Krzywinski
BC Cancer Research Center
Co-authored papers 31
David W Scott
University of British Columbia
Co-authored papers 31
Martin R Jones
BC Cancer Research Centre.
Co-authored papers 29
Nina Thiessen
Co-authored papers 28
Angela Tam
Co-authored papers 27
Samuel Aparicio
University of British Columbia
Co-authored papers 27
Yaron S Butterfield
Brain Tumour Foundation of Canada
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Amy G Robertson
Present address: Dxige Research Inc.
Co-authored papers 26
Michael D Taylor
The Hospital for Sick Children
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Anca Sorana Morrissy
Cumming School of Medicine, University of Calgary
Co-authored papers 26
David G Huntsman
University of British Columbia
Co-authored papers 26
LaDeana W Hillier
University of Washington
Co-authored papers 25
Eric Chuah
Co-authored papers 25
Malachi Griffith
Washington University
Co-authored papers 21
Olena Morozova
University of California Santa Cruz Genomics Institute
Co-authored papers 20
Richard K Wilson
The Ohio State University
Co-authored papers 19
Trevor J Pugh
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 19
Joseph F Costello
University of California san francisco
Co-authored papers 18
Kasmintan A Schrader
University of British Columbia
Co-authored papers 18
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