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Author Details

Brandy Klotzle
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
2009
36
25
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
26902887DNA methylation profiles in African American prostate cancer patients in relation to disease progression.Genomics2019
30304370Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data.Bioinformatics2019
30007336COL18A1 is a candidate eye iridocorneal angle-closure gene in humans.Hum Mol Genet2018
27358489Epigenome-Wide Tumor DNA Methylation Profiling Identifies Novel Prognostic Biomarkers of Metastatic-Lethal Progression in Men Diagnosed with Clinically Localized Prostate Cancer.Clin Cancer Res2017
29137428<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles.Oncotarget2017
27134041Mutation in ADORA1 identified as likely cause of early-onset parkinsonism and cognitive dysfunction.Mov Disord2016
26612861Substantial DNA methylation differences between two major neuronal subtypes in human brain.Nucleic Acids Res2016
26675814Identification of mutation in GTPBP2 in patients of a family with neurodegeneration accompanied by iron deposition in the brain.Neurobiol Aging2016
27651837Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy.Clin Epigenetics2016
27142338Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes.Cancer2016
25725944HMSN-P caused by p.Pro285Leu mutation in TFG is not confined to patients with Far East ancestry.Neurobiol Aging2015
26305677Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics.Oncotarget2015
26383847Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.Prostate2015
26692910Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors.Clin Epigenetics2015
24057217Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites.Nucleic Acids Res2014
25455305Diagnosis of cystathionine beta-synthase deficiency by genetic analysis.J Neurol Sci2014
25179373Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.Genomics2014
24844137Clinical investigational studies for validation of a next-generation sequencing in vitro diagnostic device for cystic fibrosis testing.Expert Rev Mol Diagn2014
24949580Identification of p.Gln858* in ATP13A2 in two EOPD patients and presentation of their clinical features.Neurosci Lett2014
24718283Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence.Cancer Epidemiol Biomarkers Prev2014
23295441Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.Gastroenterology2013
23759946The novel mutation p.Asp251Asn in the β-subunit of succinate-CoA ligase causes encephalomyopathy and elevated succinylcarnitine.J Hum Genet2013
23509297Whole-genome haplotyping by dilution, amplification, and sequencing.Proc Natl Acad Sci U S A2013
23550148Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor.Cancer Discov2013
23571109Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel.Hum Mol Genet2013
23177740Genome-wide methylation profiles reveal quantitative views of human aging rates.Mol Cell2013
23166001PANK2 and C19orf12 mutations are common causes of neurodegeneration with brain iron accumulation.Mov Disord2013
22098531Manifestation of diffuse yellowish keratoderma on the palms and soles in autosomal recessive congenital ichthyosis patients may be indicative of mutations in NIPAL4.J Dermatol2012
23064414Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia.Nat Genet2012
22539340LTBP2 mutations cause Weill-Marchesani and Weill-Marchesani-like syndrome and affect disruptions in the extracellular matrix.Hum Mutat2012
22347404Highly parallel genome-wide expression analysis of single mammalian cells.PLoS One2012
21843359Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay.BMC Genomics2011
21839163High density DNA methylation array with single CpG site resolution.Genomics2011
21865163Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth.J Biol Chem2011
19410283Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer.Gynecol Oncol2009
19997620Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.PLoS One2009
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Collaborators

Jian-Bing Fan
Nanfang Hospital and Basic Medical College, Southern Medical University
Co-authored papers 30
Marina Bibikova
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 20
Janet L Stanford
Fred Hutchinson Cancer Research Center
Co-authored papers 8
Elaine A Ostrander
National Cancer Institute
Co-authored papers 8
Jonathan L Wright
University of Washington Medical Center
Co-authored papers 6
Suzanne Kolb
Fred Hutchinson Cancer Research Center
Co-authored papers 4
Mostafa Ronaghi
Co-authored papers 4
Daniel W Lin
Co-authored papers 3
Fiona Kaper
Co-authored papers 2
Han-Yu Chuang
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 2
Peter S Nelson
Fred Hutchinson Cancer Center
Co-authored papers 2
Raymond S Lance
Washington State University Elson S. Floyd College of Medicine
Co-authored papers 2
Alexey Kozlenkov
Co-authored papers 2
Dean A Troyer
Eastern Virginia Medical School
Co-authored papers 2
Yasmin L Hurd
Co-authored papers 2
Panos Roussos
Co-authored papers 2
Stella Dracheva
Co-authored papers 2
Simon Heath
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 1
Miao Yu
Co-authored papers 1
Ling Zhao
Sun Yat-sen University
Co-authored papers 1
Gottfried E Konecny
David Geffen School of Medicine at University of California Los Angeles
Co-authored papers 1
Karel Pacak
Eunice Kennedy Shriver National Institute of Child Health and Human Development
Co-authored papers 1
Dorothea Emig
Departments of Bioinformatics and Clinical Genomics, Illumina Inc.
Co-authored papers 1
Kevin L Gunderson
Illumina Inc.
Co-authored papers 1
Stephen H Friend
University of Oxford
Co-authored papers 1
Nicholas J Schork
University of California San Diego
Co-authored papers 1
Rong Li
University of Texas Health
Co-authored papers 1
Chuan He
Institute of Hematology, West China Hospital of Sichuan University
Co-authored papers 1
Elias Campo
Institute for Biomedical Research August Pi I Sunyer
Co-authored papers 1
Antonio Hurtado-Coll
University of British Columbia
Co-authored papers 1
Release 1.2