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Author Details

Zongliang Yue
University of Alabama at Birmingham, USA Informatics Institute
2014
19
7
Jake Y. Chen (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35263568A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts.Immunity2022
35758816DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features.Bioinformatics2022
35495152PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics.Front Genet2022
36407327WINNER: A network biology tool for biomolecular characterization and prioritization.Front Big Data2022
35852875An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases.JCI Insight2022
35263568A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts.Immunity2022
35495152PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics.Front Genet2022
35758816DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features.Bioinformatics2022
35852875An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases.JCI Insight2022
36407327WINNER: A network biology tool for biomolecular characterization and prioritization.Front Big Data2022
33245774PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.Nucleic Acids Res2021
34120146Metabolic alterations mediated by STAT3 promotes drug persistence in CML.Leukemia2021
34251623Biological Network Mining.Methods Mol Biol2021
33245774PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.Nucleic Acids Res2021
34870191Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.Front Big Data2021
34604741Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.Front Big Data2021
34870191Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.Front Big Data2021
34604741Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.Front Big Data2021
34251623Biological Network Mining.Methods Mol Biol2021
34120146Metabolic alterations mediated by STAT3 promotes drug persistence in CML.Leukemia2021
31114876BEERE: a web server for biomedical entity expansion, ranking and explorations.Nucleic Acids Res2019
31406955Graft-Versus-Host Disease-Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology.JCO Precis Oncol2019
31114876BEERE: a web server for biomedical entity expansion, ranking and explorations.Nucleic Acids Res2019
31406955Graft-Versus-Host Disease-Free Antitumoral Signature After Allogeneic Donor Lymphocyte Injection Identified by Proteomics and Systems Biology.JCO Precis Oncol2019
29126216PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.Nucleic Acids Res2018
30040650"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data.IEEE/ACM Trans Comput Biol Bioinform2018
29126216PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.Nucleic Acids Res2018
30040650"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data.IEEE/ACM Trans Comput Biol Bioinform2018
29297292Repositioning drugs by targeting network modules: a Parkinson's disease case study.BMC Bioinformatics2017
29297292Repositioning drugs by targeting network modules: a Parkinson's disease case study.BMC Bioinformatics2017
26887344Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation.Am J Transplant2016
26887344Proteomic Characterization Reveals That MMP-3 Correlates With Bronchiolitis Obliterans Syndrome Following Allogeneic Hematopoietic Cell and Lung Transplantation.Am J Transplant2016
26072489PAGER: constructing PAGs and new PAG-PAG relationships for network biology.Bioinformatics2015
26423722DMAP: a connectivity map database to enable identification of novel drug repositioning candidates.BMC Bioinformatics2015
26072489PAGER: constructing PAGs and new PAG-PAG relationships for network biology.Bioinformatics2015
26423722DMAP: a connectivity map database to enable identification of novel drug repositioning candidates.BMC Bioinformatics2015
25350940SLDR: a computational technique to identify novel genetic regulatory relationships.BMC Bioinformatics2014
25350940SLDR: a computational technique to identify novel genetic regulatory relationships.BMC Bioinformatics2014
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Collaborators

Jake Y Chen
Co-authored papers 18
Jake Y. Chen (CM4AI)
University of Alabama at Birmingham
Co-authored papers 18
Thanh Nguyen
University of Alabama at Birmingham
Co-authored papers 7
Christopher D Willey
University of Alabama at Birmingham
Co-authored papers 4
Michael T Neylon
Co-authored papers 3
Timothy L Ratliff
Purdue University
Co-authored papers 2
Robert S Welner
University of Alabama at Birmingham
Co-authored papers 2
Sophie Paczesny
Hollings Cancer Center, Medical University of South Carolina
Co-authored papers 2
Anita B Hjelmeland
University of Alabama at Birmingham
Co-authored papers 2
Hui Huang
Shanghai Jiao Tong University
Co-authored papers 2
Vincent A Laufer
University of Alabama at Birmingham
Co-authored papers 2
Qing Zhang
Beijing Hospital of Traditional Chinese Medicine, Capital Medical University
Co-authored papers 2
Radomir M Slominski
University of Alabama at Birmingham
Co-authored papers 2
Son Do Hai Dang
Informatics Institute, The University of Alabama at Birmingham
Co-authored papers 1
Virginia Camacho
Boston Children's Hospital, Harvard Medical School
Co-authored papers 1
Huanmei Wu
Temple University College of Public Health
Co-authored papers 1
Kevin J Lee
Mayo Clinic
Co-authored papers 1
Henry Yang
Cancer Science Institute of Singapore, National University of Singapore
Co-authored papers 1
Rui Lu
O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham
Co-authored papers 1
Samuel Bharti
Amity Institute of Biotechnology, Amity University
Co-authored papers 1
Victoria R Matkins
O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham
Co-authored papers 1
Fady M Mikhail
University of Alabama at Birmingham
Co-authored papers 1
Xianwei Cui
Nanjing Medical University
Co-authored papers 1
George Yancey Gillespie
Heersink School of Medicine, The University of Alabama at Birmingham
Co-authored papers 1
Christian T Stackhouse
Co-authored papers 1
Daniel J Silberger
University of Alabama at Birmingham
Co-authored papers 1
Zhenyu Weng
Institute of Big Data Technologies, Peking University
Co-authored papers 1
Steven Witte
University of Alabama at Birmingham
Co-authored papers 1
Yuesheng Zhu
Institute of Big Data Technologies, Peking University
Co-authored papers 1
Guimu Guo
The University of Alabama at Birmingham
Co-authored papers 1
Release 1.2