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Author Details

Xinshu Xiao
University of California los angeles
2001
87
35
PMIDPaper TitleJournal TitlePublished Year
36449563Single-Cell Analysis in Lung Adenocarcinoma Implicates RNA Editing in Cancer Innate Immunity and Patient Prognosis.Cancer Res2023
37481717Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in a panel of inbred and recombinant inbred mice.Cell Rep2023
37333092dsRID: Editing-free in silico identification of dsRNA region using long-read RNA-seq data.bioRxiv2023
37027465Widespread RNA hypoediting in schizophrenia and its relevance to mitochondrial function.Sci Adv2023
36865202LINE-associated cryptic splicing induces dsRNA-mediated interferon response and tumor immunity.bioRxiv2023
36054357scAllele: A versatile tool for the detection and analysis of variants in scRNA-seq.Sci Adv2022
35992085Multifaceted role of RNA editing in promoting loss-of-function of PODXL in cancer.iScience2022
35961439Improved zebra finch brain transcriptome identifies novel proteins with sex differences.Gene2022
33005047Comment on "New anti-hyperglycaemic agents for type 2 diabetes and their effects on diabetic retinopathy".Eye (Lond)2021
33619405Long-term maturation of human cortical organoids matches key early postnatal transitions.Nat Neurosci2021
34494556Lipin 1 modulates mRNA splicing during fasting adaptation in liver.JCI Insight2021
34166378Genetics of white color and iridophoroma in "Lemon Frost" leopard geckos.PLoS Genet2021
33452016Allele-specific alternative splicing and its functional genetic variants in human tissues.Genome Res2021
33092484Extracellular microRNA 3' end modification across diverse body fluids.Epigenetics2021
32573492p38 Mitogen-activated protein kinase regulates chamber-specific perinatal growth in heart.J Clin Invest2020
32003773Statistical inference of differential RNA-editing sites from RNA-sequencing data by hierarchical modeling.Bioinformatics2020
33196678Molecular consequences of fetal alcohol exposure on amniotic exosomal miRNAs with functional implications for stem cell potency and differentiation.PLoS One2020
33106178RNA editing in cancer impacts mRNA abundance in immune response pathways.Genome Biol2020
30503770A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions.Mol Cell2019
31542416mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq.Cell Syst2019
31081512DeepPASTA: deep neural network based polyadenylation site analysis.Bioinformatics2019
30902979Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.Nat Commun2019
30652130Regulation of RNA editing by RNA-binding proteins in human cells.Commun Biol2019
30559470Widespread RNA editing dysregulation in brains from autistic individuals.Nat Neurosci2019
28961734Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development.Bioinformatics2018
30052912TAPAS: tool for alternative polyadenylation site analysis.Bioinformatics2018
30042172Coregulation of alternative splicing by hnRNPM and ESRP1 during EMT.RNA2018
29702004Human tRNA-Derived Small RNAs Modulate Host-Oral Microbial Interactions.J Dent Res2018
29360038FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch.Elife2018
29724793RNA editing in nascent RNA affects pre-mRNA splicing.Genome Res2018
29742391Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence.Stem Cell Reports2018
29685897Characterization of Human Salivary Extracellular RNA by Next-generation Sequencing.Clin Chem2018
28878122Wnt11 regulates cardiac chamber development and disease during perinatal maturation.JCI Insight2017
28281539Extensive translation of circular RNAs driven by N<sup>6</sup>-methyladenosine.Cell Res2017
29093448Structure-mediated modulation of mRNA abundance by A-to-I editing.Nat Commun2017
26975654Global analyses of endonucleolytic cleavage in mammals reveal expanded repertoires of cleavage-inducing small RNAs and their targets.Nucleic Acids Res2016
26619120RBFox1-mediated RNA splicing regulates cardiac hypertrophy and heart failure.J Clin Invest2016
27618650The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy.Nat Med2016
27591185Decoding the Long Noncoding RNA During Cardiac Maturation: A Roadmap for Functional Discovery.Circ Cardiovasc Genet2016
27623010Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes.Elife2016
27322469Systems Nutrigenomics Reveals Brain Gene Networks Linking Metabolic and Brain Disorders.EBioMedicine2016
26888265Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins.Genome Res2016
26745669Research Resource: Hormones, Genes, and Athleticism: Effect of Androgens on the Avian Muscular Transcriptome.Mol Endocrinol2016
27059949Catabolic Defect of Branched-Chain Amino Acids Promotes Heart Failure.Circulation2016
25376581The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva.Clin Chem2015
26323713RASER: reads aligner for SNPs and editing sites of RNA.Bioinformatics2015
26531099ESRP2 controls an adult splicing programme in hepatocytes to support postnatal liver maturation.Nat Commun2015
25999984Noncoding RNAs in human saliva as potential disease biomarkers.Front Genet2015
25730491Genome sequence-independent identification of RNA editing sites.Nat Methods2015
25751603Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways.Nat Commun2015
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Collaborators

Tracey W Chan
University of California los angeles
Co-authored papers 9
Gordon H Williams
Co-authored papers 9
Yibin Wang
Co-authored papers 8
Christopher B Burge
Co-authored papers 8
Shuxun Ren
Co-authored papers 5
Gene W Yeo
University of California
Co-authored papers 4
Eric L Van Nostrand
University of California
Co-authored papers 4
Christoph D Rau
Co-authored papers 3
Matteo Pellegrini
Co-authored papers 3
Thomas M Vondriska
Co-authored papers 2
Brenton R Graveley
Co-authored papers 2
Aldons J Lusis
Co-authored papers 2
Mete Civelek
Center for Public Health Genomics, University of Virginia
Co-authored papers 2
Tao Jiang
University of California riverside
Co-authored papers 2
Karolina Elżbieta Kaczor-Urbanowicz
Co-authored papers 2
Daniel H Geschwind
University of California los angeles
Co-authored papers 2
Eleazar Eskin
Co-authored papers 2
Xintao Wei
Co-authored papers 2
Giovanni Coppola
David Geffen School of Medicine, University of California los angeles
Co-authored papers 2
David Elashoff
David Geffen School of Medicine at University of California los angeles
Co-authored papers 2
Julian P Whitelegge
Co-authored papers 2
Zhihua Wang
Co-authored papers 2
Christopher B Newgard
Duke Molecular Physiology Institute
Co-authored papers 1
Todd M Preuss
Co-authored papers 1
Farhad Hormozdiari
Co-authored papers 1
Joel Rozowsky
Co-authored papers 1
Bin Zhang
Graduate School of Medicine, The University of Tokyo
Co-authored papers 1
Jau-Nian Chen
University of California los angeles
Co-authored papers 1
Rockie Chong
University of California los angeles
Co-authored papers 1
Jimena Andersen
Stanford University
Co-authored papers 1
Release 1.2