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Author Details

Bogumil Kaczkowski
RIKEN Center for Integrative Medical Sciences
2009
30
19
PMIDPaper TitleJournal TitlePublished Year
36631751xcore: an R package for inference of gene expression regulators.BMC Bioinformatics2023
37759202Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties.BMC Genomics2023
35114569Inhibition of BCL2A1 by STAT5 inactivation overcomes resistance to targeted therapies of FLT3-ITD/D835 mutant AML.Transl Oncol2022
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
29712924Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.Sci Rep2018
30080437JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.Epigenetics2018
28698358Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC.Mol Cancer Res2017
26552699Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers.Cancer Res2016
25957166Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection.J Immunol2015
26510915CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors.Genome Res2015
25885340Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin.BMC Cancer2015
24373459MicroRNA expression analysis and Multiplex ligation-dependent probe amplification in metastatic and non-metastatic uveal melanoma.Acta Ophthalmol2014
25546138Down-Regulation of miR-129-5p and the let-7 Family in Neuroendocrine Tumors and Metastases Leads to Up-Regulation of Their Targets Egr1, G3bp1, Hmga2 and Bach1.Genes (Basel)2014
24670764A promoter-level mammalian expression atlas.Nature2014
23143109HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis.Nucleic Acids Res2013
22850566The rectal cancer microRNAome--microRNA expression in rectal cancer and matched normal mucosa.Clin Cancer Res2012
23341857A Decade of Global mRNA and miRNA Profiling of HPV-Positive Cell Lines and Clinical Specimens.Open Virol J2012
22745298HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis.Blood2012
22808421Integrative analyses reveal novel strategies in HPV11,-16 and -45 early infection.Sci Rep2012
21252286Global microRNA analysis of the NCI-60 cancer cell panel.Mol Cancer Ther2011
22146134How the RNA isolation method can affect microRNA microarray results.Acta Biochim Pol2011
21782796Differential expression of cellular microRNAs in HPV 11, -16, and -45 transfected cells.Biochem Biophys Res Commun2011
21166724The microRNA molecular signature of atypic and common acquired melanocytic nevi: differential expression of miR-125b and let-7c.Exp Dermatol2011
21253018MicroRNA expression profiling of the porcine developing brain.PLoS One2011
20416947Changes in oncomiR expression in CTCL cell lines during apoptosis induced by Notch inhibition.Leuk Res2010
21078297Differential expression of cellular microRNAs in HPV-11 transfected cells. An analysis by three different array platforms and qRT-PCR.Biochem Biophys Res Commun2010
20950121A simple procedure for routine RNA extraction and miRNA array analyses from a single thyroid in vivo fine needle aspirate.Scand J Clin Lab Invest2010
20201961Reproducible pattern of microRNA in normal human skin.Exp Dermatol2010
20417062MicroRNAs and potential target interactions in psoriasis.J Dermatol Sci2010
19059941Structural profiles of human miRNA families from pairwise clustering.Bioinformatics2009
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 6
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 4
Marina Lizio
Cerevance Ltd
Co-authored papers 4
Reto Guler
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 3
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 3
Sebastian Schmeier
Massey University
Co-authored papers 3
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 3
Frank Brombacher
University of Cape Town
Co-authored papers 3
Sugata Roy
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Robin Andersson
University of Copenhagen
Co-authored papers 2
Chung-Chau Hon
RIKEN center for Integrative Medical Sciences, Hiroshima University
Co-authored papers 2
Soichi Kojima
Liver Cancer Prevention Research Unit
Co-authored papers 2
Aki Minoda
Co-authored papers 2
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 2
Andrew T Kwon
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 2
Atsutaka Kubosaki
National Institute of Health Sciences.
Co-authored papers 2
Albin Sandelin
University of Copenhagen
Co-authored papers 2
Mitsuhiro Ohshima
Ohu University School of Pharmaceutical Sciences
Co-authored papers 2
Nicolas Rapin
Rigshospitalet, University of Copenhagen
Co-authored papers 2
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Frederik Otzen Bagger
Center for Genomic Medicine, Rigshospitalet Copenhagen University Hospital
Co-authored papers 2
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 2
Alessandro Bonetti
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
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