Author details

Full Name

Marco Pagni

Affiliation

ORCID

Career Start Year

1988

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37518055	New leptestherid clam shrimps (Pancrustacea: Branchiopoda: Spinicaudata: Leptestheriidae) from peninsular India.		2023
37919276	Fungal antigenic variation using mosaicism and reassortment of subtelomeric genes' repertoires.		2023
35315560	Disentangle genus microdiversity within a complex microbial community by using a multi-distance long-read binning method: example of Candidatus Accumulibacter.	Environmental Microbiology	2022
36742342	Systems Biology in ELIXIR: modelling in the spotlight.	F1000Res	2022
32561915	Expression Pattern of the Pneumocystis jirovecii Major Surface Glycoprotein Superfamily in Patients with Pneumonia.	Journal of Infectious Diseases	2021
32157317	Anti-adipogenic signals at the onset of obesity-related inflammation in white adipose tissue.	Cellular and Molecular Life Sciences	2021
33712699	Predicting spatial patterns of soil bacteria under current and future environmental conditions.	ISME Journal	2021
33156326	MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models.	Nucleic Acids Research	2021
32482795	Vacuolins and myosin VII are required for phagocytic uptake and phagosomal membrane recycling in .	Journal of Cell Science	2020
32184981	New genome assembly of the barn owl (<i>Tyto alba alba</i>).	Ecol Evol	2020
32210949	Transcriptional Responses of Exposed to Different Classes of Bacteria.	Frontiers in Microbiology	2020
32153546	Identification of Anti- and Anti- Compounds With Potential Distinctive Structural Scaffolds From an HD-PBL Using Phenotypic Screens in Amoebae Host Models.	Frontiers in Microbiology	2020
30873177	Persistence of in the Oral Mucosa Induces a Curbed Inflammatory Host Response That Is Independent of Immunosuppression.	Frontiers in Immunology	2019
31881076	Investigating unexplained genetic variation and its expression in the arbuscular mycorrhizal fungus Rhizophagus irregularis: A comparison of whole genome and RAD sequencing data.	PLoS ONE	2019
30165436	Inferring gene expression networks with hubs using a degree weighted Lasso approach.		2019
30445518	Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.		2019
31289178	Expression and Immunostaining Analyses Suggest that Primary Homothallism Involves Trophic Cells Displaying Both Plus and Minus Pheromone Receptors.	mBio	2019
29463658	Functional and Expression Analyses of the Genes Suggest Obligate Sexuality through Primary Homothallism within Host Lungs.	mBio	2018
30091978	A systems genetics resource and analysis of sleep regulation in the mouse.	PLoS Biol	2018
29739910	Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen <i>Pneumocystis</i>.	mBio	2018
29690317	A new species of genus Eulimnadia Packard, 1874 (Branchiopoda: Spinicaudata: Limnadiidae) from India with an updated key for some Indian species.	Zootaxa	2018
27980062	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
29209081	Low number of fixed somatic mutations in a long-lived oak tree.	Nat Plants	2017
29114024	Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus .	mBio	2017
28076662	Vps13F links bacterial recognition and intracellular killing in Dictyostelium.	Cellular Microbiology	2017
27859907	Identification and Functional Ascertainment of the Pneumocystis jirovecii Potential Drug Targets Gsc1 and Kre6 Involved in Glucan Synthesis.	Journal of Eukaryotic Microbiology	2017
27789701	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
27822542	RNA Sequencing-Based Genome Reannotation of the Dermatophyte <i>Arthroderma benhamiae</i> and Characterization of Its Secretome and Whole Gene Expression Profile during Infection.	mSystems	2016
27063111	The salivary microbiome for differentiating individuals: proof of principle.	Microbes and Infection	2016
26953600	Population genomics reveals that within-fungus polymorphism is common and maintained in populations of the mycorrhizal fungus Rhizophagus irregularis.	ISME Journal	2016
26527720	MetaNetX/MNXref--reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.	Nucleic Acids Res	2016
26396240	RNA Enrichment Method for Quantitative Transcriptional Analysis of Pathogens In Vivo Applied to the Fungus Candida albicans.	mBio	2015
25587012	Comparative genomics suggests primary homothallism of Pneumocystis species.	mBio	2015
25691634	Functional characterization of the Pneumocystis jirovecii potential drug targets dhfs and abz2 involved in folate biosynthesis.	Antimicrobial Agents and Chemotherapy	2015
25062922	Comparative genomics suggests that the human pathogenic fungus Pneumocystis jirovecii acquired obligate biotrophy through gene loss.	Genome Biology and Evolution	2014
23172809	Reconciliation of metabolites and biochemical reactions for metabolic networks.	Brief Bioinform	2014
25041483	Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps.	Mol Ecol	2014
24599149	Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing.	PLoS ONE	2014
23539304	Density-based hierarchical clustering of pyro-sequences on a large scale--the case of fungal ITS1.	Bioinformatics	2013
24339830	Plant species distributions along environmental gradients: do belowground interactions with fungi matter?	Front Plant Sci	2013
23357920	MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.		2013
23631913	Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.	mBio	2013
23505298	pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.	Bioinformatics	2013
23269827	De novo assembly of the Pneumocystis jirovecii genome from a single bronchoalveolar lavage fluid specimen from a patient.	mBio	2012
21914877	Complete genome sequence of the dog commensal and human pathogen Capnocytophaga canimorsus strain 5.	Journal of Bacteriology	2011
21188143	Comparative genomics suggests that the fungal pathogen pneumocystis is an obligate parasite scavenging amino acids from its host's lungs.	PLoS One	2010
19440302	Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources.	PLoS One	2009
22477769	PDB_REDO: automated re-refinement of X-ray structure models in the PDB.	Journal of Applied Crystallography	2009
19406928	The Microbe browser for comparative genomics.	Nucleic Acids Res	2009
18621748	Experience using web services for biological sequence analysis.	Brief Bioinform	2008