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Author Details

Granger Sutton
J. Craig Venter Institute
1993
48
30
PMIDPaper TitleJournal TitlePublished Year
37338371Escherichia coli ST131 Associated with Increased Mortality in Bloodstream Infections from Urinary Tract Source.J Clin Microbiol2023
32493786Newly Named Klebsiella aerogenes (formerly Enterobacter aerogenes) Is Associated with Poor Clinical Outcomes Relative to Other <i>Enterobacter</i> Species in Patients with Bloodstream Infection.J Clin Microbiol2020
30612540OMeta: an ontology-based, data-driven metadata tracking system.BMC Bioinformatics2019
30165579Large-scale comparative analysis of microbial pan-genomes using PanOCT.Bioinformatics2019
31099835Ceftazidime-Avibactam in Combination With Fosfomycin: A Novel Therapeutic Strategy Against Multidrug-Resistant Pseudomonas aeruginosa.J Infect Dis2019
29668840GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.Bioinformatics2018
29945570PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.BMC Bioinformatics2018
30012762Characterization of the AmpC β-Lactamase from Burkholderia multivorans.Antimicrob Agents Chemother2018
29983287Sequence heterogeneity of the PenA carbapenemase in clinical isolates of Burkholderia multivorans.Diagn Microbiol Infect Dis2018
28130240LOCUST: a custom sequence locus typer for classifying microbial isolates.Bioinformatics2017
26856261Genomic insights into the Ixodes scapularis tick vector of Lyme disease.Nat Commun2016
27965456Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.mBio2016
26195261A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii.Genome Biol2015
23682142Draft Genome Sequences of Two Pairs of Human Intestinal Bifidobacterium longum subsp. longum Strains, 44B and 1-6B and 35B and 2-2B, Consecutively Isolated from Two Children after a 5-Year Time Period.Genome Announc2013
24098822Pathogenomic inference of virulence-associated genes in Leptospira interrogans.PLoS Negl Trop Dis2013
22140108CharProtDB: a database of experimentally characterized protein annotations.Nucleic Acids Res2012
22722832The bonobo genome compared with the chimpanzee and human genomes.Nature2012
22904089PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species.Nucleic Acids Res2012
21350493Judging the Archon Genomics X PRIZE for whole human genome sequencing.Nat Genet2011
20007151The Protein Naming Utility: a rules database for protein nomenclature.Nucleic Acids Res2010
21048761Genomic and functional adaptation in surface ocean planktonic prokaryotes.Nature2010
20831800An algorithm for automated closure during assembly.BMC Bioinformatics2010
20929810Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.Science2010
20865041Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential.PLoS One2010
20211242Assembly algorithms for next-generation sequencing data.Genomics2010
19892825The comprehensive microbial resource.Nucleic Acids Res2010
19843611Pathema: a clade-specific bioinformatics resource center for pathogen research.Nucleic Acids Res2010
19815760Genomics. Genome project standards in a new era of sequencing.Science2009
18057021Assembly reconciliation.Bioinformatics2008
18952627Aggressive assembly of pyrosequencing reads with mates.Bioinformatics2008
18321888Consensus generation and variant detection by Celera Assembler.Bioinformatics2008
18213365The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples.PLoS One2008
18404212Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.PLoS Genet2008
18402669Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.BMC Bioinformatics2008
17355171The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.PLoS Biol2007
17994087Evolution of genes and genomes on the Drosophila phylogeny.Nature2007
17803354The diploid genome sequence of an individual human.PLoS Biol2007
17355176The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.PLoS Biol2007
16840556A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.Proc Natl Acad Sci U S A2006
15632090Gene and alternative splicing annotation with AIR.Genome Res2005
15952874A tool for analyzing mate pairs in assemblies (TAMPA).J Comput Biol2005
15496912Shotgun sequence assembly and recent segmental duplications within the human genome.Nature2004
15700403ThurGood: evaluating assembly-to-assembly mapping.J Comput Biol2004
10672174A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.Mol Microbiol2000
8938416The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification.Plant Physiol1996
7569993The minimal gene complement of Mycoplasma genitalium.Science1995
8590690Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa.Int J Syst Bacteriol1995
8367301A quality control algorithm for DNA sequencing projects.Nucleic Acids Res1993
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Collaborators

J C Venter
The J. Craig Venter Institute
Co-authored papers 11
Aaron L Halpern
Illumina Inc.
Co-authored papers 8
Robert L Strausberg
Ludwig Institute for Cancer Research
Co-authored papers 7
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 7
Marvin Frazier
Co-authored papers 6
Shibu Yooseph
University of Central Florida
Co-authored papers 6
Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 5
Yu-Hui Rogers
Johns Hopkins Bayview Research Campus
Co-authored papers 5
Karen E Nelson
J. Craig Venter Institute, 9605 Medical Center Drive
Co-authored papers 5
Sergey Koren
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 5
Karin A Remington
The J. Craig Venter Institute.
Co-authored papers 4
Shannon J Williamson
J. Craig Venter Institute
Co-authored papers 4
Mark D Adams
Case Western Reserve University School of Medicine
Co-authored papers 4
Douglas B Rusch
Center for Genomics and Bioinformatics, Indiana University
Co-authored papers 4
Robert Friedman
University of South Carolina
Co-authored papers 4
Eli Venter
Vanderbilt University, Columbia University Medical Center
Co-authored papers 3
Robert J Dodson
Northwestern University Biomedical Informatics Center and Center for Genetic Medicine
Co-authored papers 3
Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 3
Karen Beeson
J. Craig Venter Institute
Co-authored papers 3
Saul Kravitz
Co-authored papers 3
Daniel H Haft
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Jennifer R Wortman
Broad Institute of MIT and Harvard
Co-authored papers 3
Karla B Heidelberg
The University of Southern California
Co-authored papers 3
Clark Mobarry
Co-authored papers 3
Chinnappa D Kodira
GE Global Research Center
Co-authored papers 3
Vishvanath Nene
International Livestock Research Institute (ILRI)
Co-authored papers 2
Dana Busam
J. Craig Venter Institute
Co-authored papers 2
Anthony R Kerlavage
National Cancer Institute
Co-authored papers 2
Shannon Dugan
Baylor College of Medicine
Co-authored papers 2
Evgeny M Zdobnov
University of Geneva
Co-authored papers 2
Release 1.2