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Author Details

Andrew Rambaut
Institute of Ecology and Evolution, University of Edinburgh
1995
272
107
PMIDPaper TitleJournal TitlePublished Year
36939356Comparison of Eleven RNA Extraction Methods for Poliovirus Direct Molecular Detection in Stool Samples.Microbiol Spectr2023
37917680APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016.Science2023
37713452SCORPIO: a utility for defining and classifying mutation constellations of virus genomes.Bioinformatics2023
37710003Distinct monkeypox virus lineages co-circulating in humans before 2022.Nat Med2023
37591995Sensitive poliovirus detection using nested PCR and nanopore sequencing: a prospective validation study.Nat Microbiol2023
37845314SARS-CoV-2 evolution in the Omicron era.Nat Microbiol2023
37745602Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.bioRxiv2023
37471538Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.Science2023
36926449Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea.Virus Evol2023
36758567New nomenclature for mpox (monkeypox) and monkeypox virus clades.Lancet Infect Dis2023
35022580Publisher Correction: Monitoring key epidemiological parameters of SARS-CoV-2 transmission.Nat Med2022
35502202Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer.Virus Evol2022
35500026Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination.PLoS Pathog2022
35637337An early warning system for emerging SARS-CoV-2 variants.Nat Med2022
35760080Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa.Nat Med2022
35749419Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022.Rev Inst Med Trop Sao Paulo2022
36533153The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.Virus Evol2022
35998195Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus.PLoS Biol2022
35952712Context-specific emergence and growth of the SARS-CoV-2 Delta variant.Nature2022
36325034SPREAD 4: online visualisation of pathogen phylogeographic reconstructions.Virus Evol2022
35881010The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic.Science2022
35881005The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2.Science2022
35042229Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa.Nature2022
35148677Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences.BMC Genomics2022
33419936Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.Science2021
33853970Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.Science2021
33514928Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.Nat Microbiol2021
33789012Ebola Virus Transmission Initiated by Relapse of Systemic Ebola Virus Disease.N Engl J Med2021
33621484Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity.Cell2021
33504980Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.Nat Microbiol2021
33528560Relax, Keep Walking - A Practical Guide to Continuous Phylogeographic Inference with BEAST.Mol Biol Evol2021
34981043Context-specific emergence and growth of the SARS-CoV-2 Delta variant.Res Sq2021
34499854Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic.Cell2021
34527285Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool.Virus Evol2021
34588460Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.Nat Commun2021
34526718Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks.Nature2021
34750555Monitoring key epidemiological parameters of SARS-CoV-2 transmission.Nat Med2021
34480864The origins of SARS-CoV-2: A critical review.Cell2021
34301854Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.Science2021
34075212SARS-CoV-2 variants, spike mutations and immune escape.Nat Rev Microbiol2021
34210356CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.Genome Biol2021
34168419Massive parallelization boosts big Bayesian multidimensional scaling.J Comput Graph Stat2021
34163035Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda.Nat Microbiol2021
34108654SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.Nat Microbiol2021
33462438Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.Nat Microbiol2021
33275900Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.Cell2021
32511416The emergence of SARS-CoV-2 in Europe and the US.bioRxiv2020
32101295Online Bayesian Phylodynamic Inference in BEAST with Application to Epidemic Reconstruction.Mol Biol Evol2020
33408877Determinants of dengue virus dispersal in the Americas.Virus Evol2020
33235813Temporal signal and the phylodynamic threshold of SARS-CoV-2.Virus Evol2020
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Collaborators

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Marc A Suchard
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Co-authored papers 59
Edward C Holmes
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Co-authored papers 43
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Beth Shapiro
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Robert F Garry
Tulane University School of Medicine
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University of California San Diego
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Adrianne Gladden-Young
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Shirlee Wohl
The Scripps Research Institute
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Ian Goodfellow
University of Cambridge
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Cécile Viboud
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Jean-Jacques Muyembe-Tamfum
National Institute of Biomedical Research (INRB)
Co-authored papers 3
Lily Tong
MRC - University of Glasgow Centre for Virus Research, University of Glasgow
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Bruce W Birren
Broad Institute of MIT and Harvard
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Alexander Crits-Christoph
University of California berkeley
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Yves Moreau
KU Leuven - University of Leuven
Co-authored papers 2
Tetyana I Vasylyeva
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Release 1.2