Author details

Full Name

Devin K Schweppe

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36732331	Sample multiplexing-based targeted pathway proteomics with real-time analytics reveals the impact of genetic variation on protein expression.	Nat Commun	2023
36414539	Conditional Fragment Ion Probabilities Improve Database Searching for Nonmonoisotopic Precursors.	Journal of Proteome Research	2023
36593396	A proteome-wide atlas of drug mechanism of action.	Nat Biotechnol	2023
37405913	Global and tissue-specific aging effects on murine proteomes.	Cell Rep	2023
36711823	Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci .		2023
37119813	CysDB: a human cysteine database based on experimental quantitative chemoproteomics.		2023
35381187	Redox-dependent structure and dynamics of macrophage migration inhibitory factor reveal sites of latent allostery.	Structure	2022
35696663	Reducing Peptide Sequence Bias in Quantitative Mass Spectrometry Data with Machine Learning.	Journal of Proteome Research	2022
34652972	Strategies for mass spectrometry-based phosphoproteomics using isobaric tagging.	Expert Review of Proteomics	2021
33961781	Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.	Cell	2021
33455035	Advances in quantitative high-throughput phosphoproteomics with sample multiplexing.	Proteomics	2021
33190505	Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage.	J Proteome Res	2021
33398154	Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries.	Nat Biotechnol	2021
32533918	Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization.	Mol Cell	2020
32203386	TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples.	Nat Methods	2020
31799850	Optimized Workflow for Multiplexed Phosphorylation Analysis of TMT-Labeled Peptides Using High-Field Asymmetric Waveform Ion Mobility Spectrometry.	J Proteome Res	2020
32134636	Correction to Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry.	Anal Chem	2020
32250601	Benchmarking the Orbitrap Tribrid Eclipse for Next Generation Multiplexed Proteomics.	Anal Chem	2020
32126768	Full-Featured, Real-Time Database Searching Platform Enables Fast and Accurate Multiplexed Quantitative Proteomics.	J Proteome Res	2020
32358195	Facultative protein selenation regulates redox sensitivity, adipose tissue thermogenesis, and obesity.	Proc Natl Acad Sci U S A	2020
32109415	A Quantitative Tissue-Specific Landscape of Protein Redox Regulation during Aging.	Cell	2020
31990573	Parallel Notched Gas-Phase Enrichment for Improved Proteome Identification and Quantification with Fast Spectral Acquisition Rates.	J Proteome Res	2020
32332170	Sample multiplexing for targeted pathway proteomics in aging mice.	Proc Natl Acad Sci U S A	2020
32031408	In Vivo Cross-Linking MS Reveals Conservation in OmpA Linkage to Different Classes of Î²-Lactamase Enzymes.	J Am Soc Mass Spectrom	2020
30672687	Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry.	Anal Chem	2019
30501201	TomahaqCompanion: A Tool for the Creation and Analysis of Isobaric Label Based Multiplexed Targeted Assays.	J Proteome Res	2019
30658528	Active Instrument Engagement Combined with a Real-Time Database Search for Improved Performance of Sample Multiplexing Workflows.	J Proteome Res	2019
29665372	Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.	J Mol Biol	2018
29054129	BioPlex Display: An Interactive Suite for Large-Scale AP-MS Protein-Protein Interaction Data.	J Proteome Res	2018
29180569	The skeletal phenotype of achondrogenesis type 1A is caused exclusively by cartilage defects.	Development	2018
28130547	Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry.	Proc Natl Acad Sci U S A	2017
28967377	Intrinsic disorder within AKAP79 fine-tunes anchored phosphatase activity toward substrates and drug sensitivity.	Elife	2017
28514442	Architecture of the human interactome defines protein communities and disease networks.	Nature	2017
28152603	Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.	J Proteome Res	2017
27834373	In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075.	Nat Commun	2016
27153666	XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.	Bioinformatics	2016
27341434	InÂ Vivo Conformational Dynamics of Hsp90 and Its Interactors.	Cell Chem Biol	2016
26801089	Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis.	Arthritis Res Ther	2016
27089058	Spectral Library Searching To Identify Cross-Linked Peptides.	J Proteome Res	2016
26411867	XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.		2016
27997545	A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry.	PLoS One	2016
26235782	Quantitative interactome analysis reveals a chemoresistant edgotype.	Nat Commun	2015
26548613	Host-Microbe Protein Interactions during Bacterial Infection.		2015
23911959	Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors.	Journal of Proteomics	2013
21712546	Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells.	Science Signaling	2011
19561126	A nondesensitizing kainate receptor point mutant.	Molecular Pharmacology	2009