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Author Details

Adam Godzik
University of California Riverside
1987
372
77
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36711654Sexual dimorphism in obesity is governed by RELMα regulation of adipose macrophages and eosinophils.bioRxiv2023
34553433Novel putative polyethylene terephthalate (PET) plastic degrading enzymes from the environmental metagenome.Proteins2022
35435721A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins.J Bacteriol2022
35762711What the protein data bank tells us about the evolutionary conservation of protein conformational diversity.Protein Sci2022
35719386Increased Frequency of Indels in Hypervariable Regions of SARS-CoV-2 Proteins-A Possible Signature of Adaptive Selection.Front Genet2022
35860230Resistin Concentration in Early Sepsis and All-Cause Mortality at a Safety-Net Hospital in Riverside County.J Inflamm Res2022
36560718ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes.Viruses2022
36169197Genetic Divergence of Vibrio vulnificus Clinical Isolates with Mild to Severe Outcomes.mBio2022
35254094Actin Cross-Linking Effector Domain of the <i>Vibrio vulnificus</i> F-Type MARTX Toxin Dominates Disease Progression During Intestinal Infection.Infect Immun2022
35115515Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria.Nat Commun2022
35264249Correction to: Microbial function and genital inflammation in young South African women at high risk of HIV infection.Microbiome2022
33972023ModFlex: Towards Function Focused Protein Modeling.J Mol Biol2021
33656416Identification and phylogenetic analysis of RNA binding domain abundant in apicomplexans or RAP proteins.Microb Genom2021
33690265Detection of a SARS-CoV-2 variant of concern in South Africa.Nature2021
34237054The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.PLoS Comput Biol2021
32511376The crystal structure of nsp10-nsp16 heterodimer from SARS-CoV-2 in complex with S-adenosylmethionine.bioRxiv2020
31811683Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment.Protein Sci2020
33220709Microbial function and genital inflammation in young South African women at high risk of HIV infection.Microbiome2020
33073387Protein structure, amino acid composition and sequence determine proteome vulnerability to oxidation-induced damage.EMBO J2020
32817947The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.bioRxiv2020
32306515Comparison of metal-bound and unbound structures of aminopeptidase B proteins from Escherichia coli and Yersinia pestis.Protein Sci2020
32470119Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.Bioinformatics2020
32469061FATCAT 2.0: towards a better understanding of the structural diversity of proteins.Nucleic Acids Res2020
32239503Understanding oncogenicity of cancer driver genes and mutations in the cancer genomics era.FEBS Lett2020
32163442Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins.PLoS One2020
30407596Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.Nucleic Acids Res2019
31306512Structures of single-layer β-sheet proteins evolved from β-hairpin repeats.Protein Sci2019
29348331Draft Genome Sequences of Two <i>Vibrio parahaemolyticus</i> Strains Associated with Gastroenteritis after Raw Seafood Ingestion in Colorado.Genome Announc2018
30096302Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
29625053Comprehensive Characterization of Cancer Driver Genes and Mutations.Cell2018
28573570The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability.Methods Mol Biol2017
29254494Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.Genome Med2017
28854369The Functional Impact of Alternative Splicing in Cancer.Cell Rep2017
28714987Comparison of algorithms for the detection of cancer drivers at subgene resolution.Nat Methods2017
27050129UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex.Acta Crystallogr D Struct Biol2016
26515826Protael: protein data visualization library for the web.Bioinformatics2016
26615193PDBFlex: exploring flexibility in protein structures.Nucleic Acids Res2016
27334472Revealing aperiodic aspects of solenoid proteins from sequence information.Bioinformatics2016
27385826Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination.Proc Natl Acad Sci U S A2016
27401919Mutation Drivers of Immunological Responses to Cancer.Cancer Immunol Res2016
27154589NMR in structural genomics to increase structural coverage of the protein universe: Delivered by Prof. Kurt Wüthrich on 7 July 2013 at the 38th FEBS Congress in St. Petersburg, Russia.FEBS J2016
27243773Neutralizing antibody affords comparable protection against vaginal and rectal simian/human immunodeficiency virus challenge in macaques.AIDS2016
26940874Crystal Structure and Activity Studies of the C11 Cysteine Peptidase from Parabacteroides merdae in the Human Gut Microbiome.J Biol Chem2016
27062925A Distinct Type of Pilus from the Human Microbiome.Cell2016
26766578Broadly Neutralizing Antibody Responses in a Large Longitudinal Sub-Saharan HIV Primary Infection Cohort.PLoS Pathog2016
25392415Cancer3D: understanding cancer mutations through protein structures.Nucleic Acids Res2015
26485003A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces.PLoS Comput Biol2015
26374125Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.mBio2015
26635892PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB.Source Code Biol Med2015
26177955Cofactor-induced reversible folding of Flavodoxin-4 from Lactobacillus acidophilus.Protein Sci2015
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Collaborators

Lukasz Jaroszewski
University of California Riverside School of Medicine
Co-authored papers 169
Ian A Wilson
The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology
Co-authored papers 130
Scott A Lesley
Merck & Co., Inc.
Co-authored papers 121
Marc-Andr?? Elsliger
Joint Center for Structural Genomics
Co-authored papers 120
Ashley M Deacon
Accelero Biostructures Inc., USA XPose Therapeutics Inc.
Co-authored papers 120
Mitchell D Miller
Rice University
Co-authored papers 108
Heath E Klock
Merck & Co., Inc.
Co-authored papers 103
John Wooley
University of California
Co-authored papers 102
Hsiu-Ju Chiu
Joint Center for Structural Genomics
Co-authored papers 96
Qingping Xu
Argonne National Laboratory
Co-authored papers 96
Keith O Hodgson
Stanford University
Co-authored papers 90
Henry van den Bedem
University of California San Francisco
Co-authored papers 89
Daniel McMullan
Genomics Institute of the Novartis Research Foundation
Co-authored papers 87
Andrew T Morse
Co-authored papers 78
Polat Abdubek
Regeneron Pharmaceuticals, Inc.
Co-authored papers 73
Slawomir K Grzechnik
Co-authored papers 72
Mark W Knuth
Joint Center for Structural Genomics
Co-authored papers 67
Ron Reyes
Co-authored papers 67
Herbert L Axelrod
Joint Center for Structural Genomics
Co-authored papers 61
Edward Nigoghossian
Genomics Institute of the Novartis Research Foundation
Co-authored papers 61
Gye Won Han
Bridge Institute, University of Southern California
Co-authored papers 59
Sanjay Krishna
Institute of Science, Banaras Hindu University
Co-authored papers 57
Christopher L Rife
The Joint Center for Structural Genomics, Stanford University
Co-authored papers 50
Peter Kuhn
University of Tubingen
Co-authored papers 47
Kevin K Jin
Cardiovascular Institute, Stanford University School of Medicine
Co-authored papers 47
Raymond C Stevens
iHuman Institute, ShanghaiTech University
Co-authored papers 47
Thomas Clayton
Celgene/Bristol-Myers Squibb Corporation
Co-authored papers 46
Julie Feuerhelm
Co-authored papers 46
Lian Duan
Brown University
Co-authored papers 46
Dana Weekes
Joint Center for Structural Genomics, Sanford-Burnham Medical Research Institute
Co-authored papers 46
Release 1.2