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Author Details

Athanasios Typas
University of California san francisco
2005
75
42
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38092943High-throughput anaerobic screening for identifying compounds acting against gut bacteria in monocultures or communities.Nat Protoc2024
36779294Unravelling metabolic cross-feeding in a yeast-bacteria community using <sup>13</sup> C-based proteomics.Mol Syst Biol2023
37594988A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella.PLoS Biol2023
37485738Consistency across multi-omics layers in a drug-perturbed gut microbial community.Mol Syst Biol2023
37770760Systematic analysis of drug combinations against Gram-positive bacteria.Nat Microbiol2023
37251515The New Microbiology: an international lecture course on the island of Spetses.Microlife2023
37365341D-amino acids signal a stress-dependent run-away response in Vibrio cholerae.Nat Microbiol2023
34663920High-throughput functional characterization of protein phosphorylation sites in yeast.Nat Biotechnol2022
35604931Early midcell localization of Escherichia coli PBP4 supports the function of peptidoglycan amidases.PLoS Genet2022
35468126Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs.PLoS Comput Biol2022
35850148Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems.Nature2022
363127502FAST2Q: a general-purpose sequence search and counting program for FASTQ files.PeerJ2022
36102515Transient Glycolytic Complexation of Arsenate Enhances Resistance in the Enteropathogen Vibrio cholerae.mBio2022
34140700Impact of phosphorylation on thermal stability of proteins.Nat Methods2021
33734582Towards a mechanistic understanding of reciprocal drug-microbiome interactions.Mol Syst Biol2021
33590968SARS-CoV-2 infection remodels the host protein thermal stability landscape.Mol Syst Biol2021
34646011Unravelling the collateral damage of antibiotics on gut bacteria.Nature2021
34497420Bioaccumulation of therapeutic drugs by human gut bacteria.Nature2021
34491080Transcriptional and Post-Transcriptional Polar Effects in Bacterial Gene Deletion Libraries.mSystems2021
34237247Global mapping of Salmonella enterica-host protein-protein interactions during infection.Cell Host Microbe2021
32127419Systematic Localization of Escherichia coli Membrane Proteins.mSystems2020
31811739The first wide-scale drug repurposing screen using the Prestwick Chemical Library (1200 bioactive molecules) against Neisseria gonorrhoeae identifies high in vitro activity of auranofin and many additional drugs.APMIS2020
32009249Outer membrane lipoprotein NlpI scaffolds peptidoglycan hydrolases within multi-enzyme complexes in Escherichia coli.EMBO J2020
33299184The functional proteome landscape of Escherichia coli.Nature2020
32497502A Dual-Mechanism Antibiotic Kills Gram-Negative Bacteria and Avoids Drug Resistance.Cell2020
32269338Author Correction: A new antibiotic selectively kills Gram-negative pathogens.Nature2020
32514074Spatiotemporal proteomics uncovers cathepsin-dependent macrophage cell death during Salmonella infection.Nat Microbiol2020
32133759Thermal proteome profiling for interrogating protein interactions.Mol Syst Biol2020
32130952Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer.Cell Host Microbe2020
31591555Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice.Nat Microbiol2019
31747680A new antibiotic selectively kills Gram-negative pathogens.Nature2019
31885205The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae.Mol Syst Biol2019
29033457Emerging and evolving concepts in gene essentiality.Nat Rev Genet2018
29973719Species-specific activity of antibacterial drug combinations.Nature2018
29980614Thermal proteome profiling in bacteria: probing protein state <i>in vivo</i>.Mol Syst Biol2018
30349083Recovery of gut microbiota of healthy adults following antibiotic exposure.Nat Microbiol2018
30573687A resource of variant effect predictions of single nucleotide variants in model organisms.Mol Syst Biol2018
29555994Extensive impact of non-antibiotic drugs on human gut bacteria.Nature2018
29706546Pervasive Protein Thermal Stability Variation during the Cell Cycle.Cell2018
29556107Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.Nat Microbiol2018
28732023Correction: A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S.PLoS Genet2017
32715163Chemical genetics in drug discovery.Curr Opin Syst Biol2017
28431245Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans.Cell2017
28189581Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.Cell Syst2017
28211844A tool named Iris for versatile high-throughput phenotyping in microorganisms.Nat Microbiol2017
28964698Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow.Cell Syst2017
29280730Phenotype inference in an <i>Escherichia coli</i> strain panel.Elife2017
29169088Systematically investigating the impact of medication on the gut microbiome.Curr Opin Microbiol2017
29143823Salt-responsive gut commensal modulates T<sub>H</sub>17 axis and disease.Nature2017
26773059Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundances.Nucleic Acids Res2016
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Collaborators

Peer Bork
University of Wurzburg
Co-authored papers 13
Carol A Gross
University of California san francisco
Co-authored papers 9
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 8
George Kritikos
Institute of Microbiology and Infection, University of Birmingham
Co-authored papers 8
Matylda Zietek
Co-authored papers 7
Robert J Nichols
Stanford University
Co-authored papers 4
Georg Zeller
Max Planck Institute for Developmental Biology
Co-authored papers 4
Tanneke den Blaauwen
Swammerdam Institute for Life Sciences, University of Amsterdam
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 4
Kristoffer Forslund
Max Delbruck Center for Molecular Medicine (MDC)
Co-authored papers 3
Manimozhiyan Arumugam
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
Co-authored papers 3
Danish Memon
European Bioinformatics Institute
Co-authored papers 2
Michael Shales
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 2
Jonathan S Weissman
Whitehead Institute for Biomedical Research
Co-authored papers 2
Karen E Nelson
J. Craig Venter Institute, 9605 Medical Center Drive
Co-authored papers 2
Kim Lewis
Co-authored papers 2
Hendrik Osadnik
University of California San Francisco
Co-authored papers 2
Anthony L Shiver
Stanford University
Co-authored papers 2
Hirotada Mori
Nara Institute of Science and Technology
Co-authored papers 2
Martin Beck
Max Planck Institute of Biophysics
Co-authored papers 2
Sebastian Hiller
University of Basel
Co-authored papers 2
Rachna Chaba
Indian Institute of Science Education and Research (IISER) Mohali
Co-authored papers 2
Omar Wagih
European Bioinformatics Institute
Co-authored papers 2
Annika Hausmann
Co-authored papers 2
Sean R Collins
University of California davis
Co-authored papers 1
Markus Ralser
Charite - Universitatsmedizin Berlin
Co-authored papers 1
Joshua D Rabinowitz
Lewis Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 1
Bruno Lemaitre
Global Health Institute, Ecole Polytechnique Federale de Lausanne (EPFL)
Co-authored papers 1
Saunak Sen
University of Tennessee Health Science Center
Co-authored papers 1
Silvia D M Santos
The Francis Crick Institute
Co-authored papers 1
Release 1.2