Author details

Full Name

Serafim Batzoglou

Affiliation

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36989217	Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls.	PLoS One	2023
37693476	Protein Coronas on Functionalized Nanoparticles Enable Quantitative and Precise Large-Scale Deep Plasma Proteomics.	bioRxiv	2023
37205491	The landscape of tolerated genetic variation in humans and primates.	bioRxiv	2023
37262156	The landscape of tolerated genetic variation in humans and primates.	Science	2023
35275789	Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions.	Proceedings of the National Academy of Sciences of the United States of America	2022
32471482	Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.	Genome Med	2020
31584621	Meltos: multi-sample tumor phylogeny reconstruction for structural variants.	Bioinformatics	2020
30661751	Predicting Splicing from Primary Sequence with Deep Learning.	Cell	2019
30559491	Author Correction: Predicting the clinical impact of human mutation with deep neural networks.	Nat Genet	2019
31350405	A machine-compiled database of genome-wide association studies.	Nat Commun	2019
29658784	Fast Metagenomic Binning via Hashing and Bayesian Clustering.	J Comput Biol	2018
29914369	HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data.	BMC Genomics	2018
30340047	Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.	Cell	2018
30038395	Predicting the clinical impact of human mutation with deep neural networks.	Nat Genet	2018
30082777	Network enhancement as a general method to denoise weighted biological networks.	Nat Commun	2018
30367051	Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival.	Nat Commun	2018
30320765	High-quality genome sequences of uncultured microbes by assembly of read clouds.	Nat Biotechnol	2018
30033370	Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.	Cell	2018
29265724	SIMLR: A Tool for Large-Scale Genomic Analyses by Multi-Kernel Learning.	Proteomics	2018
28165067	Microbial Typing by Machine Learned DNA Melt Signatures.	Sci Rep	2017
28508884	A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy.	Nature Communications	2017
28714986	Genome-wide reconstruction of complex structural variants using read clouds.	Nat Methods	2017
29023470	Vicus: Exploiting local structures to improve network-based analysis of biological data.	PLoS Comput Biol	2017
28263960	Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning.	Nat Methods	2017
26353840	Reveel: large-scale population genotyping using low-coverage sequencing data.		2016
27307620	Genome assembly from synthetic long read clouds.	Bioinformatics	2016
26655498	Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome.	Nat Biotechnol	2016
26286554	Read clouds uncover variation in complex regions of the human genome.	Genome Research	2015
25713363	Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation.	Proc Natl Acad Sci U S A	2015
25918554	Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia.	Genome Med	2015
25871848	Constraint and divergence of global gene expression in the mammalian embryo.	Elife	2015
25273070	Parente2: a fast and accurate method for detecting identity by descent.	Genome Research	2015
25944252	Fast and scalable inference of multi-sample cancer lineages.	Genome Biol	2015
24931972	Computational biology and bioinformatics.		2014
24667521	An effective filter for IBD detection in large data sets.	PLoS ONE	2014
23568837	Genome evolution during progression to breast cancer.	Genome Research	2013
23813006	Short read alignment with populations of genomes.		2013
23812982	Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans.	Bioinformatics	2013
24195709	Inference of tumor phylogenies with improved somatic mutation discovery.	Journal of Computational Biology	2013
24136358	Extensive variation in chromatin states across humans.	Science	2013
23421795	Ancestry inference in complex admixtures via variable-length Markov chain linkage models.	Journal of Computational Biology	2013
22102592	The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome.	Nucleic Acids Res	2012
22955991	ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.	Genome Res	2012
22955986	Linking disease associations with regulatory information in the human genome.	Genome Res	2012
22955985	Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements.	Genome Res	2012
22955619	Architecture of the human regulatory network derived from ENCODE data.	Nature	2012
21685089	Reconstruction of genealogical relationships with applications to Phase III of HapMap.		2011
20067941	Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.	Genome Res	2010
21152010	Identifying a high fraction of the human genome to be under selective constraint using GERP++.	PLoS Comput Biol	2010
20377440	RECOMB Main Conference 2009.	Journal of Computational Biology	2010