Author details

Full Name

Benjamin C Hitz

Affiliation

Stanford University School of Medicine

ORCID

Career Start Year

1992

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37292896	The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.	bioRxiv	2023
37066421	The ENCODE Uniform Analysis Pipelines.	bioRxiv	2023
37173523	Annotating and prioritizing human non-coding variants with RegulomeDB v.2.	Nat Genet	2023
37292896	The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.	bioRxiv	2023
37503119	The ENCODE Uniform Analysis Pipelines.	Res Sq	2023
37503119	The ENCODE Uniform Analysis Pipelines.	Res Sq	2023
37173523	Annotating and prioritizing human non-coding variants with RegulomeDB v.2.	Nat Genet	2023
37066421	The ENCODE Uniform Analysis Pipelines.	bioRxiv	2023
31713622	New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.	Nucleic Acids Res	2020
31713622	New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.	Nucleic Acids Res	2020
31751002	The ENCODE Portal as an Epigenomics Resource.	Curr Protoc Bioinformatics	2019
31751002	The ENCODE Portal as an Epigenomics Resource.	Curr Protoc Bioinformatics	2019
29126249	The Encyclopedia of DNA elements (ENCODE): data portal update.	Nucleic Acids Res	2018
29126249	The Encyclopedia of DNA elements (ENCODE): data portal update.	Nucleic Acids Res	2018
29688363	Prevention of data duplication for high throughput sequencing repositories.	Database (Oxford)	2018
29688363	Prevention of data duplication for high throughput sequencing repositories.	Database (Oxford)	2018
28403240	SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.	PLoS One	2017
28403240	SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.	PLoS One	2017
26980513	Principles of metadata organization at the ENCODE data coordination center.	Database (Oxford)	2016
27252399	Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.	Database (Oxford)	2016
26980513	Principles of metadata organization at the ENCODE data coordination center.	Database (Oxford)	2016
26578556	The Saccharomyces Genome Database Variant Viewer.	Nucleic Acids Res	2016
26527727	ENCODE data at the ENCODE portal.	Nucleic Acids Res	2016
26527727	ENCODE data at the ENCODE portal.	Nucleic Acids Res	2016
26578556	The Saccharomyces Genome Database Variant Viewer.	Nucleic Acids Res	2016
27252399	Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.	Database (Oxford)	2016
25776021	Ontology application and use at the ENCODE DCC.	Database (Oxford)	2015
28930648	H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency.	Cell	2015
25776021	Ontology application and use at the ENCODE DCC.	Database (Oxford)	2015
28930648	H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency.	Cell	2015
24265222	Saccharomyces genome database provides new regulation data.	Nucleic Acids Res	2014
24265222	Saccharomyces genome database provides new regulation data.	Nucleic Acids Res	2014
24374639	The reference genome sequence of Saccharomyces cerevisiae: then and now.	G3 (Bethesda)	2014
25083876	H3K4me3 breadth is linked to cell identity and transcriptional consistency.	Cell	2014
25083876	H3K4me3 breadth is linked to cell identity and transcriptional consistency.	Cell	2014
24374639	The reference genome sequence of Saccharomyces cerevisiae: then and now.	G3 (Bethesda)	2014
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23396302	The YeastGenome app: the Saccharomyces Genome Database at your fingertips.	Database (Oxford)	2013
23652793	InterMOD: integrated data and tools for the unification of model organism research.	Sci Rep	2013
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23652793	InterMOD: integrated data and tools for the unification of model organism research.	Sci Rep	2013
23396302	The YeastGenome app: the Saccharomyces Genome Database at your fingertips.	Database (Oxford)	2013
22110037	Saccharomyces Genome Database: the genomics resource of budding yeast.	Nucleic Acids Res	2012
22434830	YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.	Database (Oxford)	2012
22955989	Annotation of functional variation in personal genomes using RegulomeDB.	Genome Res	2012
22110037	Saccharomyces Genome Database: the genomics resource of budding yeast.	Nucleic Acids Res	2012
22955989	Annotation of functional variation in personal genomes using RegulomeDB.	Genome Res	2012
22434830	YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.	Database (Oxford)	2012
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010

1 - 50 of 62

Olivier Sallou

Institut de Recherche en Informatique et Systemes Aleatoires, Rennes University

Career Start Year 2011

Number of shared co-authors 2

Premanand Achuthan

European Bioinformatics Institute

Career Start Year 2010

Number of shared co-authors 8

Philip Ewels

Stockholm University

Career Start Year 2008

Number of shared co-authors 1

Michael Lawrence

Center for Cancer Research, Massachusetts General Hospital, Harvard Medical School

Career Start Year 2008

Number of shared co-authors 0

Nathan Sheffield (CM4AI)

University of Virginia

Career Start Year 2007

Number of shared co-authors 3

Geir Kjetil Sandve

University of Oslo

Career Start Year 2006

Number of shared co-authors 0

Daniel R Zerbino

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 7

Michael M Hoffman

University of Toronto

Career Start Year 2004

Number of shared co-authors 9

James Taylor

Johns Hopkins University

Career Start Year 2004

Number of shared co-authors 12

Andrew D Yates

European Bioinformatics Institute

Career Start Year 2004

Number of shared co-authors 12

Andrew R Jackson

Baylor College of Medicine

Career Start Year 2004

Number of shared co-authors 5

Junjun Zhang

Ontario Institute for Cancer Research

Career Start Year 2003

Number of shared co-authors 6

Timo Lassmann

Telethon Kids Institute, University of Western Australia

Career Start Year 2002

Number of shared co-authors 9

Chunlei Wu

The Scripps Research Institute

Career Start Year 2002

Number of shared co-authors 4

Brent S Pedersen

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2001

Number of shared co-authors 1

Michael Brudno

University of Toronto

Career Start Year 2000

Number of shared co-authors 10

Tony Burdett

European Bioinformatics Institute

Career Start Year 2000

Number of shared co-authors 9

Karen Eilbeck

University of Utah

Career Start Year 1999

Number of shared co-authors 43

Paul Flicek

European Bioinformatics Institute

Career Start Year 1999

Number of shared co-authors 29

Mark Diekhans

Genomics Institute, University of California Santa Cruz

Career Start Year 1999

Number of shared co-authors 10

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Career Start Year 1997

Number of shared co-authors 14

Helen Parkinson

European Bioinformatics Institute

Career Start Year 1997

Number of shared co-authors 24

Jessica Severin

Center for Integrative Medical Sciences

Career Start Year 1996

Number of shared co-authors 5

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 14

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 4

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 3

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 31

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 20

Nomi L Harris

Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University

Career Start Year 1990

Number of shared co-authors 60

Kim D Pruitt

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1989

Number of shared co-authors 14

row(s) 1 - 30 of 30

J Michael Cherry

Stanford University

Co-authored papers 26

Eurie L Hong

Stanford University School of Medicine

Co-authored papers 15

Stuart R Miyasato

Stanford University

Co-authored papers 13

Gail Binkley

Stanford University

Co-authored papers 12

Edith D Wong

Stanford University

Co-authored papers 12

Kalpana Karra

Stanford University

Co-authored papers 11

Shuai Weng

Stanford University

Co-authored papers 10

Maria C Costanzo

The Broad Institute of Harvard and MIT

Co-authored papers 10

Stacia R Engel

Stanford University

Co-authored papers 10

Idan Gabdank

Co-authored papers 10

Rama Balakrishnan

Genentech Inc.

Co-authored papers 10

J Seth Strattan

Co-authored papers 9

Marek S Skrzypek

Stanford University

Co-authored papers 9

Robert S Nash

Stanford University

Co-authored papers 9

Jean M Davidson

Stanford University School of Medicine

Co-authored papers 8

Otto Jolanki

Co-authored papers 8

Julie Park

Stanford University

Co-authored papers 7

Dianna G Fisk

Stanford Medicine Clinical Genomics Program

Co-authored papers 6

Venkat S Malladi

UT Southwestern Medical Center

Co-authored papers 6

Brian T Lee

Genomics Institute, University of California Santa Cruz

Co-authored papers 6

Selina S Dwight

Stanford University School of Medicine

Co-authored papers 6

Jason A Hilton

Co-authored papers 6

Jodi E Hirschman

Broad Institute of MIT and Harvard

Co-authored papers 4

Michael Snyder

Stanford University

Co-authored papers 4

Karen R Christie

Stanford University Medical School

Co-authored papers 4

Anshul Kundaje

Stanford University.

Co-authored papers 4

Rose Oughtred

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 3

Diane Trout

Co-authored papers 3

David Botstein

Calico Life Sciences LLC

Co-authored papers 3

Dana Wyman

Co-authored papers 3

1 - 30

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