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Author Details

P??draig Cunningham
University College Dublin
2000
23
12
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35370341An empirical evaluation of kernels for time series.Artif Intell Rev2022
26482666Derivation of Candidate Clinical Decision Rules to Identify Infants at Risk for Central Apnea.Pediatrics2015
23661563All or nothing: protein complexes flip essentiality between distantly related eukaryotes.Genome Biol Evol2013
22681890Hierarchical modularity and the evolution of genetic interactomes across species.Mol Cell2012
21269807Ensemble based system for whole-slide prostate cancer probability mapping using color texture features.Comput Med Imaging Graph2011
21877290Imputing and predicting quantitative genetic interactions in epistatic MAPs.Methods Mol Biol2011
21605386Improved functional overview of protein complexes using inferred epistatic relationships.BMC Syst Biol2011
20406472Missing value imputation for epistatic MAPs.BMC Bioinformatics2010
21118509Ensemble approach combining multiple methods improves human transcription start site prediction.BMC Genomics2010
19820114High DNA melting temperature predicts transcription start site location in human and mouse.Nucleic Acids Res2009
18556670Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.Bioinformatics2008
19561711Comparison of the evaluations of a case-based reasoning decision support tool by specialist expert reviewers with those of end users.West J Emerg Med2008
18831786Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data.BMC Genomics2008
18986526MetaFIND: a feature analysis tool for metabolomics data.BMC Bioinformatics2008
16871720Application of simulated annealing to the biclustering of gene expression data.IEEE Trans Inf Technol Biomed2006
15713738A knowledge-driven approach to cluster validity assessment.Bioinformatics2005
16231963cluML: A markup language for clustering and cluster validity assessment of microarray data.Appl Bioinformatics2005
15608048An integrated tool for microarray data clustering and cluster validity assessment.Bioinformatics2005
15359198An artificial neural network ensemble to predict disposition and length of stay in children presenting with bronchiolitis.Eur J Emerg Med2004
12893119Explaining the output of ensembles in medical decision support on a case by case basis.Artif Intell Med2003
11779685The problem of bias in training data in regression problems in medical decision support.Artif Intell Med2002
11052414Tuning diversity in bagged ensembles.Int J Neural Syst2000
10998588Stability problems with artificial neural networks and the ensemble solution.Artif Intell Med2000
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Collaborators

Gerard Cagney
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Co-authored papers 6
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 5
Colm J Ryan
University College Dublin
Co-authored papers 5
Derek Greene
University College Dublin (UCD) School of Computer Science, University College Dublin
Co-authored papers 5
Sean R Collins
University of California davis
Co-authored papers 1
Joseph I Kliegman
University of California san francisco
Co-authored papers 1
Jiewei Xu
Quantitative Biosciences Institute (QBI), University of California san francisco
Co-authored papers 1
Aude Gu??nol??
CNRS, Universite de Toulouse
Co-authored papers 1
Hyun-Soo Kim
Wonju Severance Christian Hospital
Co-authored papers 1
Kevan M Shokat
University of California San Francisco
Co-authored papers 1
Chao Tang
Peking University
Co-authored papers 1
Haico van Attikum
Leiden University Medical Center
Co-authored papers 1
Lingli Jiang
Jiangsu University
Co-authored papers 1
Christine Guthrie
University of California san francisco
Co-authored papers 1
Peter J Espenshade
Johns Hopkins University School of Medicine
Co-authored papers 1
Zongtian Tong
1University of Maryland School of Pharmacy
Co-authored papers 1
Assen Roguev
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
Co-authored papers 1
Harlizawati Jahari
Co-authored papers 1
Elena Tosti
Albert Einstein College of Medicine
Co-authored papers 1
J Peter Svensson
Karolinska Institutet
Co-authored papers 1
Gillian O'Hurley
OncoMark Ltd
Co-authored papers 1
Hongjing Qu
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 1
Winfried Edelmann
Albert Einstein College of Medicine
Co-authored papers 1
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 1
Dwight Kuo
University of California
Co-authored papers 1
Michael-Christopher Keogh
EpiCypher Inc.
Co-authored papers 1
Kristin L Patrick
Texas A&M University School of Medicine
Co-authored papers 1
Pedro Beltrao
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
Michael Shales
University of California, USA Quantitative Biosciences Institute (QBI) san francisco
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Release 1.2