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Author Details

Ni Zhao
Johns Hopkins Bloomberg School of Public Health
2004
47
17
PMIDPaper TitleJournal TitlePublished Year
36993431MIDASim: a fast and simple simulator for realistic microbiome data.bioRxiv2024
36658484Accommodating multiple potential normalizations in microbiome associations studies.BMC Bioinformatics2023
37081571Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.Microbiome2023
37078108The sequence kernel association test for multicategorical outcomes.Genet Epidemiol2023
37173396Pre-pregnancy body mass index and gut microbiota of mothers and children 5 years postpartum.Int J Obes (Lond)2023
36292643What Can We Learn about the Bias of Microbiome Studies from Analyzing Data from Mock Communities?Genes (Basel)2022
35734426Editorial: Methods for Single-Cell and Microbiome Sequencing Data.Front Genet2022
35432465MiRKAT-MC: A Distance-Based Microbiome Kernel Association Test With Multi-Categorical Outcomes.Front Genet2022
36045142Reusing a prepaid health plan's fecal immunochemical tests for microbiome associations with colorectal adenoma.Sci Rep2022
36109499Batch effects removal for microbiome data via conditional quantile regression.Nat Commun2022
32112086A mixed-model approach for powerful testing of genetic associations with cancer risk incorporating tumor characteristics.Biostatistics2021
33768631Meta-analysis methods for multiple related markers: Applications to microbiome studies with the results on multiple α-diversity indices.Stat Med2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34474689Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach (ZINQ).Microbiome2021
33225342MiRKAT: kernel machine regression-based global association tests for the microbiome.Bioinformatics2021
32393397A powerful microbial group association test based on the higher criticism analysis for sparse microbial association signals.Microbiome2020
32101275Composite Kernel Association Test (CKAT) for SNP-set joint assessment of genotype and genotype-by-treatment interaction in Pharmacogenetics studies.Bioinformatics2020
30430548Composite kernel machine regression based on likelihood ratio test for joint testing of genetic and gene-environment interaction effect.Biometrics2019
31156711A Distance-Based Kernel Association Test Based on the Generalized Linear Mixed Model for Correlated Microbiome Studies.Front Genet2019
31068967An Adaptive Multivariate Two-Sample Test With Application to Microbiome Differential Abundance Analysis.Front Genet2019
29285792Kernel machine methods for integrative analysis of genome-wide methylation and genotyping studies.Genet Epidemiol2018
31949621The detection of PAX8 in human upper urinary tract urothelial carcinoma.Int J Clin Exp Pathol2018
30218543A small-sample kernel association test for correlated data with application to microbiome association studies.Genet Epidemiol2018
29543916Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes.PLoS One2018
29737047Generalized Hotelling's test for paired compositional data with application to human microbiome studies.Genet Epidemiol2018
28019040A small-sample multivariate kernel machine test for microbiome association studies.Genet Epidemiol2017
28295177A fast small-sample kernel independence test for microbiome community-level association analysis.Biometrics2017
28179014MiRKAT-S: a community-level test of association between the microbiota and survival times.Microbiome2017
28642271Powerful Genetic Association Analysis for Common or Rare Variants with High-Dimensional Structured Traits.Genetics2017
27488097Prioritizing individual genetic variants after kernel machine testing using variable selection.Genet Epidemiol2016
26643881Small Sample Kernel Association Tests for Human Genetic and Microbiome Association Studies.Genet Epidemiol2016
27497442A novel copy number variants kernel association test with application to autism spectrum disorders studies.Bioinformatics2016
25582139Elderly patients with squamous cell carcinoma of the head and neck and the benefit of multimodality therapy.Oncologist2015
26740853Rare variant testing across methods and thresholds using the multi-kernel sequence kernel association test (MK-SKAT).Stat Interface2015
25957468Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test.Am J Hum Genet2015
25537884Global analysis of methylation profiles from high resolution CpG data.Genet Epidemiol2015
25030904SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samples.Nucleic Acids Res2014
25224251Alterations of LKB1 and KRAS and risk of brain metastasis: comprehensive characterization by mutation analysis, copy number, and gene expression in non-small-cell lung carcinoma.Lung Cancer2014
23846458ERCC1 protein expression is associated with differential survival in oropharyngeal head and neck squamous cell carcinoma.Otolaryngol Head Neck Surg2013
24086281The LKB1 tumor suppressor as a biomarker in mouse and human tissues.PLoS One2013
22241789Phase II efficacy and pharmacogenomic study of Selumetinib (AZD6244; ARRY-142886) in iodine-131 refractory papillary thyroid carcinoma with or without follicular elements.Clin Cancer Res2012
22735904Different cellular p16(INK4a) localisation may signal different survival outcomes in head and neck cancer.Br J Cancer2012
22590557Differential pathogenesis of lung adenocarcinoma subtypes involving sequence mutations, copy number, chromosomal instability, and methylation.PLoS One2012
21908577High XRCC1 protein expression is associated with poorer survival in patients with head and neck squamous cell carcinoma.Clin Cancer Res2011
21945387Early brain recurrences are potentially detectable in asymptomatic, early stage lung adenocarcinoma.Clin Oncol (R Coll Radiol)2011
20551147Sex-specific gene expression in the BXD mouse liver.Physiol Genomics2010
15619942Comments on "H(infinity) fuzzy control design for nonlinear singularly perturbed systems with pole placement constraints: an LMI approach".IEEE Trans Syst Man Cybern B Cybern2004
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Collaborators

David Neil Hayes
Center for Cancer Research, University of Tennessee Health Science Center
Co-authored papers 11
Matthew D Wilkerson
Uniformed Services University of the Health Sciences
Co-authored papers 6
Leigh Thorne
Co-authored papers 5
Andrew F Olshan
Co-authored papers 4
Anthony A Fodor
University of North Carolina at Charlotte
Co-authored papers 3
Noel T Mueller
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 2
Montserrat Garcia-Closas
National Cancer Institute
Co-authored papers 2
Charles M Perou
Co-authored papers 2
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Mayo Clinic
Co-authored papers 2
Nilanjan Chatterjee
Co-authored papers 2
Rob Knight
University of California
Co-authored papers 2
Scott H Randell
Co-authored papers 2
Christopher Ryan Miller
University of Illinois at Urbana-Champaign
Co-authored papers 2
Lenore J Launer
Co-authored papers 2
Norman E Sharpless
National Cancer Institute
Co-authored papers 2
Ezra E W Cohen
university of california san diego Health System
Co-authored papers 1
Ekaterina Smirnova
Institut de Genetique et de Biologie Moleculaire et Cellulaire
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Eran Segal
Weizmann Institute of Science
Co-authored papers 1
Jennifer M Fettweis
Virginia Commonwealth University
Co-authored papers 1
Weida Tong
National Center for Toxicological Research
Co-authored papers 1
Ryan T Demmer
University of Minnesota, Mailman School of Public Health Columbia University
Co-authored papers 1
Peter J Turnbaugh
University of California san francisco
Co-authored papers 1
Wendell D Jones
Department of Bioinformatics and Clinical Systems
Co-authored papers 1
Francine Z Marques
Monash University
Co-authored papers 1
Santhosh Girirajan
The Huck Institutes of Life Sciences, University Park, Pennsylvania State University
Co-authored papers 1
Suzanne Devkota
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 1
Harry Sokol
Paris Center for Microbiome Medicine
Co-authored papers 1
Ivan Rusyn
Co-authored papers 1
Mingyu Zhang
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
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Release 1.2