Author details

Full Name

Shiguo Zhou

Affiliation

Sage Science Inc.

ORCID

Career Start Year

2002

Papers

H Index

Expertise

CM4AI Collaborator

Christopher Churas (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36945366	Targeted Phasing of 2-200 Kilobase DNA Fragments with a Short-Read Sequencer and a Single-Tube Linked-Read Library Method.	bioRxiv	2023
32005944	The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.	Commun Biol	2020
26913498	A gapless genome sequence of the fungus Botrytis cinerea.	Mol Plant Pathol	2017
29203667	Electrostatic confinement and manipulation of DNA molecules for genome analysis.	Proc Natl Acad Sci U S A	2017
28851275	Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.	BMC Genomics	2017
27540062	Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.	Genome Announc	2016
27453446	Allele-Specific Quantification of Structural Variations in Cancer Genomes.	Cell Syst	2016
26056298	Single-molecule analysis reveals widespread structural variation in multiple myeloma.	Proc Natl Acad Sci U S A	2015
26314885	A clone-free, single molecule map of the domestic cow (Bos taurus) genome.	BMC Genomics	2015
26046933	Chromosome-level genome map provides insights into diverse defense mechanisms in the medicinal fungus Ganoderma sinense.	Sci Rep	2015
24767513	An improved genome release (version Mt4.0) for the model legume Medicago truncatula.	BMC Genomics	2014
25061512	High-coverage sequencing and annotated assemblies of the budgerigar genome.	Gigascience	2014
23316438	Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.	G3 (Bethesda)	2013
24280374	Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.	Rice (N Y)	2013
23885787	Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.	BMC Genomics	2013
23870653	Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.	Gigascience	2013
23738321	Comparative genomics of cryptosporidium.	Int J Genomics	2013
23590730	Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.	BMC Genomics	2013
22409516	Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.	BMC Genomics	2012
22735441	Genome sequence of the model medicinal mushroom Ganoderma lucidum.	Nat Commun	2012
22856673	AGORA: Assembly Guided by Optical Restriction Alignment.	BMC Bioinformatics	2012
22885923	Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.	Nat Genet	2012
22089132	The Medicago genome provides insight into the evolution of rhizobial symbioses.	Nature	2011
20237561	Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.	Nature	2010
20534489	High-resolution human genome structure by single-molecule analysis.	Proc Natl Acad Sci U S A	2010
19146697	Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome.	BMC Genomics	2009
19936062	A single molecule scaffold for the maize genome.	PLoS Genet	2009
19936061	The physical and genetic framework of the maize B73 genome.	PLoS Genet	2009
19936048	Detailed analysis of a contiguous 22-Mb region of the maize genome.	PLoS Genet	2009
19965430	The B73 maize genome: complexity, diversity, and dynamics.	Science	2009
19714214	The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.	PLoS Genet	2009
19741609	Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.	Nature	2009
19468303	Lineage-specific biology revealed by a finished genome assembly of the mouse.	PLoS Biol	2009
18667073	Optical mapping discerns genome wide DNA methylation profiles.	BMC Mol Biol	2008
17697381	Validation of rice genome sequence by optical mapping.	BMC Genomics	2007
17043225	An algorithm for assembly of ordered restriction maps from single DNA molecules.	Proc Natl Acad Sci U S A	2006
16020728	The genome of the kinetoplastid parasite, Leishmania major.	Science	2005
16151144	Whole-genome shotgun optical mapping of Rhodospirillum rubrum.	Appl Environ Microbiol	2005
15516592	Single-molecule approach to bacterial genomic comparisons via optical mapping.	J Bacteriol	2004
15500921	Shotgun optical mapping of the entire Leishmania major Friedlin genome.	Mol Biochem Parasitol	2004
15459382	The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.	Science	2004
12704152	Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T.	Infect Immun	2003
12952882	Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.	Genome Res	2003
12907728	The sequence and analysis of Trypanosoma brucei chromosome II.	Nucleic Acids Res	2003
12471157	Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.	Proc Natl Acad Sci U S A	2002
12450857	A whole-genome shotgun optical map of Yersinia pestis strain KIM.	Appl Environ Microbiol	2002
12142430	Genome sequence of Yersinia pestis KIM.	J Bacteriol	2002

1 - 47 of 47

Corey M Hudson

Informatics Institute, University of Missouri

Career Start Year 2011

Number of shared co-authors 1

Jeremy Wang

Center for Gastrointestinal Biology and Disease, University of North Carolina System

Career Start Year 2010

Number of shared co-authors 1

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 2

Yi Han

Baylor College of Medicine

Career Start Year 2008

Number of shared co-authors 8

Robert P Davey

Earlham Institute

Career Start Year 2007

Number of shared co-authors 7

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 2

Jue Ruan

Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

Career Start Year 2004

Number of shared co-authors 11

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 19

Aleksey V Zimin

Center for Computational Biology, Johns Hopkins University

Career Start Year 2003

Number of shared co-authors 18

Ali Bashir

Google Accelerated Science Team, Google Inc

Career Start Year 2003

Number of shared co-authors 8

Stanton L Martin

Oak Ridge National Laboratory

Career Start Year 2002

Number of shared co-authors 4

Paramvir S Dehal

Lawrence Berkeley National Laboratory

Career Start Year 2001

Number of shared co-authors 17

Samuel V Angiuoli

Personal Genome Diagnostics Inc.

Career Start Year 2001

Number of shared co-authors 20

Neil Hall

Earlham Institute

Career Start Year 2000

Number of shared co-authors 23

Alexander Sczyrba

Center for Biotechnology (CeBiTec), Bielefeld University, Universitatsstrasse 27

Career Start Year 2000

Number of shared co-authors 2

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 7

Karen Moore

University of Exeter

Career Start Year 2000

Number of shared co-authors 1

Patrick S G Chain

Los Alamos National Laboratory

Career Start Year 2000

Number of shared co-authors 14

Jo??o C Setubal

Chemistry Institute, Universidade de Sao Paulo - USP

Career Start Year 2000

Number of shared co-authors 8

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 20

Jonathan Crabtree

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1998

Number of shared co-authors 28

Navdeep Gill

Nova Southeastern University

Career Start Year 1998

Number of shared co-authors 5

Vincent Magrini

The Ohio State University

Career Start Year 1997

Number of shared co-authors 27

Tbk Reddy

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1997

Number of shared co-authors 8

Thomas Brettin

University of Chicago

Career Start Year 1996

Number of shared co-authors 14

Stefano Lonardi

University of California Riverside

Career Start Year 1996

Number of shared co-authors 6

Granger Sutton

J. Craig Venter Institute

Career Start Year 1993

Number of shared co-authors 31

Pavel A Pevzner

University of California

Career Start Year 1987

Number of shared co-authors 33

Peter J A Cock

James Hutton Institute

Career Start Year 1974

Number of shared co-authors 2

Erica Sodergren

The Genome Institute at Washington University

Career Start Year 1972

Number of shared co-authors 59

row(s) 1 - 30 of 30

David C Schwartz

University of Wisconsin-Madison

Co-authored papers 46

Steve Goldstein

University of Wisconsin-Madison

Co-authored papers 13

Christopher Churas (CM4AI)

University of California San Diego

Co-authored papers 10

Dan Forrest

Co-authored papers 10

Michael Place

Center for Genomic Science Innovation, University of Wisconsin-Madison

Co-authored papers 9

Michael Bechner

University of Wisconsin-Madison

Co-authored papers 9

Rod Runnheim

Co-authored papers 9

Konstantinos Potamousis

University of Wisconsin-Madison

Co-authored papers 8

Valerie Burland

University of Wisconsin

Co-authored papers 5

Frederick R Blattner

Scarab Genomics LLC

Co-authored papers 5

Casey Lamers

Co-authored papers 4

Fusheng Wei

University of Science and Technology Beijing

Co-authored papers 4

Andrew Kile

Co-authored papers 4

Wen Deng

University of Wisconsin

Co-authored papers 4

Doreen Ware

USDA ARS NAA Robert W. Holley Center for Agriculture and Health

Co-authored papers 4

Tina Graves

McDonnell Genome Institute, Washington University

Co-authored papers 4

Jessica Severin

Center for Integrative Medical Sciences

Co-authored papers 4

Rod A Wing

Arizona Genomics Institute, University of Arizona

Co-authored papers 4

Erika Kvikstad

University of Oxford

Co-authored papers 4

Michael S Waterman

Biocomplexity Institute and Initiative

Co-authored papers 4

Nicole T Perna

Center for Genomic Science Innovation, University of Wisconsin-Madison

Co-authored papers 4

Michael A Newton

University of Wisconsin School of Medicine and Public Health

Co-authored papers 3

Robert S Fulton

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 3

Shiran Pasternak

Co-authored papers 3

Miron Livny

Morgridge Institute for Research

Co-authored papers 3

Deepayan Sarkar

All India Institute of Medical Sciences

Co-authored papers 3

Louise Pape

University of Wisconsin-Madison

Co-authored papers 3

David R Nelson

University of Tennessee Health Science Center

Co-authored papers 3

Sandra W Clifton

Garvan Institute of Medical Research

Co-authored papers 3

Chinnappa D Kodira

GE Global Research Center

Co-authored papers 3

1 - 30

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