Author details

Full Name

Alex H Wagner

Affiliation

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

ORCID

0000-0002-2502-8961

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37953380	DGIdb 5.0: rebuilding the drug-gene interaction database for precision medicine and drug discovery platforms.	Nucleic Acids Res	2024
36373660	CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.	Nucleic Acids Res	2023
37860057	Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants.	Learn Health Syst	2023
37954974	Normalization of drug and therapeutic concepts with Thera-Py.	JAMIA Open	2023
37196000	Phenopacket-tools: Building and validating GA4GH Phenopackets.	PLoS One	2023
37426450	Minimum information and guidelines for reporting a Multiplexed Assay of Variant Effect.	ArXiv	2023
36541006	Accessing clinical-grade genomic classification data through the ClinGen Data Platform.	Pac Symp Biocomput	2023
36540993	Development and application of a computable genotype model in the GA4GH Variation Representation Specification.	Pac Symp Biocomput	2023
34907337	Correction to: Recommendations for future extensions to the HGNC gene fusion nomenclature.	Leukemia	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
35705716	The GA4GH Phenopacket schema defines a computable representation of clinical data.	Nat Biotechnol	2022
35624339	A community approach to the cancer-variant-interpretation bottleneck.	Nat Cancer	2022
36910590	GA4GH Phenopackets: A Practical Introduction.	Adv Genet (Hoboken)	2022
35871236	Genomic architecture of FGFR2 fusions in cholangiocarcinoma and its implication for molecular testing.	Br J Cancer	2022
36063163	Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).	Genet Med	2022
36222570	Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine.	Bioinformatics	2022
33631297	Artificial intelligence and pathology: From principles to practice and future applications in histomorphology and molecular profiling.	Semin Cancer Biol	2022
35101336	Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC).	Genet Med	2022
33237278	Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts.	Nucleic Acids Res	2021
35072136	GA4GH: International policies and standards for data sharing across genomic research and healthcare.	Cell Genom	2021
35311178	The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification.	Cell Genom	2021
34863095	Discovery of clinically relevant fusions in pediatric cancer.	BMC Genomics	2021
34764425	Recommendations for future extensions to the HGNC gene fusion nomenclature.	Leukemia	2021
32194985	FHIR Genomics: enabling standardization for precision medicine use cases.	NPJ Genom Med	2020
32644817	Collaborative, Multidisciplinary Evaluation of Cancer Variants Through Virtual Molecular Tumor Boards Informs Local Clinical Practices.	JCO Clin Cancer Inform	2020
32246132	A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.	Nat Genet	2020
30287923	Standard operating procedure for somatic variant refinement of sequencing data with paired tumor andÂ normal samples.	Genet Med	2019
31779674	Standard operating procedure for curation and clinical interpretation of variants in cancer.	Genome Med	2019
29156001	DGIdb 3.0: a redesign and expansion of the drug-gene interaction database.	Nucleic Acids Res	2018
30224629	Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer.	Nat Commun	2018
30397337	A deep learning approach to automate refinement of somatic variant calling from cancer sequencing data.	Nat Genet	2018
30311370	Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.	Hum Mutat	2018
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
27181063	Comprehensive genomic analysis reveals FLT3 activation and a therapeutic strategy for a patient with relapsed adult B-lymphoblastic leukemia.	Exp Hematol	2016
26531824	DGIdb 2.0: mining clinically relevant drug-gene interactions.	Nucleic Acids Res	2016
27684579	DoCM: a database of curated mutations in cancer.	Nat Methods	2016
27229768	Whole-gene sequencing investigation of SAT1 in attempted suicide.	Am J Med Genet B Neuropsychiatr Genet	2016
27288499	GenVisR: Genomic Visualizations in R.	Bioinformatics	2016
24767545	Optic nerve crush induces spatial and temporal gene expression patterns in retina and optic nerve of BALB/cJ mice.	Mol Neurodegener	2014
25446321	Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq.	Exp Eye Res	2014
23500522	Exon-level expression profiling of ocular tissues.	Exp Eye Res	2013
23508994	Prioritization of retinal disease genes: an integrative approach.	Hum Mutat	2013
23918662	Non-exomic and synonymous variants in ABCA4 are an important cause of Stargardt disease.	Hum Mol Genet	2013

1 - 43 of 43

Daniel H??bschmann

Heidelberg Institute for Stem Cell Technology and Experimental Medicine (HI-STEM)

Career Start Year 2016

Number of shared co-authors 20

Kuan-Lin Huang

Icahn School of Medicine at Mount Sinai

Career Start Year 2013

Number of shared co-authors 17

Kelly Regan

The Children's Hospital of Philadelphia

Career Start Year 2012

Number of shared co-authors 1

Andrew Devereau

Queen Mary University of London

Career Start Year 2010

Number of shared co-authors 23

Matthew S Lebo

Harvard Medical School, Brigham and Women's Hospital

Career Start Year 2009

Number of shared co-authors 22

Stephen R Piccolo

Brigham Young University

Career Start Year 2008

Number of shared co-authors 4

Ken Chen

University of Texas MD Anderson Cancer Center

Career Start Year 2007

Number of shared co-authors 56

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 5

Mark J Cowley

Children's Cancer Institute, Lowy Cancer Research Centre

Career Start Year 2006

Number of shared co-authors 15

Justin Guinney

University of Washington

Career Start Year 2006

Number of shared co-authors 19

Nicola Waddell

QIMR Berghofer Medical Research Institute

Career Start Year 2006

Number of shared co-authors 13

Jamie K Teer

H. Lee Moffitt Cancer Center and Research Institute

Career Start Year 2005

Number of shared co-authors 5

Morris A Swertz

University of Groningen, University Medical Center Groningen

Career Start Year 2004

Number of shared co-authors 55

Matthew D Wilkerson

Uniformed Services University of the Health Sciences

Career Start Year 2004

Number of shared co-authors 12

Olivier Harismendy

University of California

Career Start Year 2003

Number of shared co-authors 0

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 3

Sean D Mooney

University of Washington

Career Start Year 2001

Number of shared co-authors 23

Eric W Klee

Mayo Clinic College of Medicine and Science

Career Start Year 2001

Number of shared co-authors 12

Chunlin Xiao

Chongqing Aier Eye Hospital

Career Start Year 2000

Number of shared co-authors 5

Andrea Sboner

Institute for Computational Biomedicine

Career Start Year 2000

Number of shared co-authors 8

Yan W Asmann

Mayo Clinic

Career Start Year 2000

Number of shared co-authors 2

Hugues Sicotte

Mayo Clinic

Career Start Year 1999

Number of shared co-authors 4

Quang M Trinh

Ontario Institute for Cancer Research

Career Start Year 1999

Number of shared co-authors 6

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1997

Number of shared co-authors 73

John V Pearson

QIMR Berghofer Medical Research Institute

Career Start Year 1996

Number of shared co-authors 13

Atul J Butte

Bakar Computational Health Sciences Institute, University of California san francisco

Career Start Year 1993

Number of shared co-authors 14

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 15

Jean-Pierre A Kocher

Mayo Clinic

Career Start Year 1991

Number of shared co-authors 2

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 25

Yves A Lussier

Center for Biomedical Informatics and Biostatistics, University of Arizona

Career Start Year 1971

Number of shared co-authors 0

row(s) 1 - 30 of 30

Obi L Griffith

Washington University

Co-authored papers 22

Malachi Griffith

Washington University

Co-authored papers 22

Kilannin Krysiak

Washington University School of Medicine

Co-authored papers 13

Adam C Coffman

Washington University

Co-authored papers 10

Nicholas C Spies

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 9

Gordana Raca

Children's Hospital Los Angeles

Co-authored papers 9

Elaine R Mardis

The Ohio State University

Co-authored papers 9

Joshua F McMichael

Washington University

Co-authored papers 9

Katie M Campbell

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 8

Subha Madhavan

Innovation Center for Biomedical Informatics, Georgetown University Medical Center

Co-authored papers 8

Susanna Kiwala

Washington University

Co-authored papers 8

Zachary L Skidmore

Washington University in St. Louis School of Medicine

Co-authored papers 8

Arpad M Danos

McDonnell Genome Institute, Washington University in St Louis School of Medicine

Co-authored papers 8

Benjamin J Ainscough

McDonnell Genome Institute, Washington University in St Louis School of Medicine

Co-authored papers 8

Erica K Barnell

McDonnell Genome Institute, Washington University School of Medicine

Co-authored papers 7

Shruti Rao

Innovation Center for Biomedical Informatics, Georgetown University Medical Center

Co-authored papers 7

Deborah I Ritter

Baylor College of Medicine

Co-authored papers 7

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 6

Michael Baudis

University of Zurich

Co-authored papers 6

Richard K Wilson

The Ohio State University

Co-authored papers 6

Robert R Freimuth

Center for Individualized Medicine, Mayo Clinic

Co-authored papers 6

Melissa A Haendel

Co-authored papers 6