Author details

Full Name

Rose Oughtred

Affiliation

Lewis-Sigler Institute for Integrative Genomics, Princeton University

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37235661	Global analysis of the yeast knockout phenome.	Sci Adv	2023
37235661	Global analysis of the yeast knockout phenome.	Sci Adv	2023
36197453	Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.	Database (Oxford)	2022
36197453	Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII.	Database (Oxford)	2022
33070389	The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.	Protein Sci	2021
33070389	The BioGRID database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.	Protein Sci	2021
30685436	A Computational Framework for Genome-wide Characterization of the Human Disease Landscape.	Cell Syst	2019
30476227	The BioGRID interaction database: 2019 update.	Nucleic Acids Res	2019
30685436	A Computational Framework for Genome-wide Characterization of the Human Disease Landscape.	Cell Syst	2019
30679268	Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer.	Plant Physiol	2019
30679268	Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer.	Plant Physiol	2019
30476227	The BioGRID interaction database: 2019 update.	Nucleic Acids Res	2019
27980099	The BioGRID interaction database: 2017 update.	Nucleic Acids Res	2017
28077563	The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.	Database (Oxford)	2017
27980099	The BioGRID interaction database: 2017 update.	Nucleic Acids Res	2017
28077563	The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.	Database (Oxford)	2017
26729909	Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.	Cold Spring Harb Protoc	2016
26975778	An extended set of yeast-based functional assays accurately identifies human disease mutations.	Genome Res	2016
26729913	BioGRID: A Resource for Studying Biological Interactions in Yeast.	Cold Spring Harb Protoc	2016
26729909	Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.	Cold Spring Harb Protoc	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
26975778	An extended set of yeast-based functional assays accurately identifies human disease mutations.	Genome Res	2016
26729913	BioGRID: A Resource for Studying Biological Interactions in Yeast.	Cold Spring Harb Protoc	2016
25428363	The BioGRID interaction database: 2015 update.	Nucleic Acids Res	2015
25428363	The BioGRID interaction database: 2015 update.	Nucleic Acids Res	2015
25122463	RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.	Database (Oxford)	2014
25122463	RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.	Database (Oxford)	2014
23203989	The BioGRID interaction database: 2013 update.	Nucleic Acids Res	2013
23674503	The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update.	Database (Oxford)	2013
23203989	The BioGRID interaction database: 2013 update.	Nucleic Acids Res	2013
23674503	The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update.	Database (Oxford)	2013
21071413	The BioGRID Interaction Database: 2011 update.	Nucleic Acids Res	2011
21071413	The BioGRID Interaction Database: 2011 update.	Nucleic Acids Res	2011
21400696	Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD).	Curr Protoc Bioinformatics	2011
21400696	Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD).	Curr Protoc Bioinformatics	2011
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010
19935838	Recurated protein interaction datasets.	Nat Methods	2009
19935838	Recurated protein interaction datasets.	Nat Methods	2009
17982175	Gene Ontology annotations at SGD: new data sources and annotation methods.	Nucleic Acids Res	2008
18000002	The BioGRID Interaction Database: 2008 update.	Nucleic Acids Res	2008
17982175	Gene Ontology annotations at SGD: new data sources and annotation methods.	Nucleic Acids Res	2008
18000002	The BioGRID Interaction Database: 2008 update.	Nucleic Acids Res	2008
17142221	Expanded protein information at SGD: new pages and proteome browser.	Nucleic Acids Res	2007
17712414	The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.	PLoS One	2007
17142221	Expanded protein information at SGD: new pages and proteome browser.	Nucleic Acids Res	2007
17712414	The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.	PLoS One	2007
16381907	Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.	Nucleic Acids Res	2006
16762047	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.	J Biol	2006

1 - 50 of 64

John Harry Caufield

American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University

Career Start Year 2012

Number of shared co-authors 1

Kalpana Karra

Stanford University

Career Start Year 2010

Number of shared co-authors 22

Sadhna Phanse

University of Regina

Career Start Year 2008

Number of shared co-authors 4

Atanas Kamburov

Broad Institute of Harvard and MIT

Career Start Year 2007

Number of shared co-authors 6

Michael Riffle

University of Washington

Career Start Year 2003

Number of shared co-authors 1

Max Kotlyar

Schroeder Arthritis Institute

Career Start Year 2002

Number of shared co-authors 4

Pablo Porras

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2002

Number of shared co-authors 7

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 6

Ian M Donaldson

Samuel Lunenfeld Research Institute

Career Start Year 2000

Number of shared co-authors 9

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 22

Marcio Luis Acencio

Norwegian University of Science and Technology

Career Start Year 2000

Number of shared co-authors 3

Gerard Cagney

Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin

Career Start Year 2000

Number of shared co-authors 4

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 8

Nevan J Krogan (CM4AI)

University of California San Francisco

Career Start Year 1998

Number of shared co-authors 12

Alan Bridge

carnegie mellon university

Career Start Year 1998

Number of shared co-authors 29

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 10

Patrick Aloy

Institucio Catalana de Recerca i Estudis Avancats (ICREA)

Career Start Year 1997

Number of shared co-authors 12

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 31

Robin Haw

Ontario Institute for Cancer Research

Career Start Year 1994

Number of shared co-authors 3

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 2

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 9

Igor Stagljar

University of Toronto, Canada Mediterranean Institute for Life Sciences

Career Start Year 1993

Number of shared co-authors 10

Marc R Wilkins

University of New South Wales

Career Start Year 1992

Number of shared co-authors 1

Andrew Emili

Boston University School of Medicine, Boston University

Career Start Year 1991

Number of shared co-authors 6

Gabriel F Berriz

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 9

Lisa Matthews

NYU Grossman School of Medicine

Career Start Year 1990

Number of shared co-authors 28

Marc Gillespie

Ontario Institute for Cancer Research

Career Start Year 1990

Number of shared co-authors 11

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 22

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 8

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 20

row(s) 1 - 30 of 30

Kara Dolinski

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 26

Mike Tyers

Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal

Co-authored papers 16

Andrew Chatr-Aryamontri

Institute for Research in Immunology and Cancer (IRIC), University of Montreal

Co-authored papers 12

Jennifer Rust

Co-authored papers 12

Lorrie Boucher

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 11

Christie S Chang

Co-authored papers 11

Chris Stark

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 11

Bobby-Joe Breitkreutz

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Co-authored papers 11

Jodi E Hirschman

Broad Institute of MIT and Harvard

Co-authored papers 9

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 9

David Botstein

Calico Life Sciences LLC

Co-authored papers 9

Teresa Reguly

Samuel Lunenfeld Research Institute, Mount Sinai Hospital

Co-authored papers 7

Andrew Winter

University of Edinburgh

Co-authored papers 6

Ashton Breitkreutz

Samuel Lunenfeld Research Institute, Mount Sinai Hospital

Co-authored papers 6

Dianna G Fisk

Stanford Medicine Clinical Genomics Program

Co-authored papers 5

Maria C Costanzo

The Broad Institute of Harvard and MIT

Co-authored papers 5

Stacia R Engel

Stanford University

Co-authored papers 5

Marek S Skrzypek

Stanford University

Co-authored papers 5

Robert S Nash

Stanford University

Co-authored papers 5

J Michael Cherry

Stanford University

Co-authored papers 5

Gail Binkley

Stanford University

Co-authored papers 5

Karen R Christie

Stanford University Medical School

Co-authored papers 5

Eurie L Hong

Stanford University School of Medicine

Co-authored papers 5

Rama Balakrishnan

Genentech Inc.

Co-authored papers 5

Shuai Weng

Stanford University

Co-authored papers 5

Selina S Dwight

Stanford University School of Medicine

Co-authored papers 5

Stuart R Miyasato

Stanford University

Co-authored papers 4

Julie Park

Stanford University

Co-authored papers 4

Mark Schroeder

Co-authored papers 3

Anand Sethuraman

Stanford University School of Medicine

Co-authored papers 3

1 - 30

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