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Author Details

Barry R Zeeberg
1973
90
23
PMIDPaper TitleJournal TitlePublished Year
28443131A Bioinformatics-Based Alternative mRNA Splicing Code that May Explain Some Disease Mutations Is Conserved in Animals.Frontiers in Genetics2017
24940735Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype.PLoS One2014
23786772Transcription poisoning by Topoisomerase I is controlled by gene length, splice sites, and miR-142-3p.Cancer Res2013
22570691Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes.PLoS One2012
22848369Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples.PLoS One2012
22291933Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines.PLoS One2012
21554761Nonlinear gene cluster analysis with labeling for microarray gene expression data in organ development.BMC Proceedings2011
21310028RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis.BMC Bioinformatics2011
20616384Ontogenomic study of the relationship between number of gene splice variants and GO categorization.Bioinformatics2010
21234308Gene Expression Signatures of Peripheral Blood Mononuclear Cells during the Early Post-Transplant Period in Patients Developing Cardiac Allograft Vasculopathy.J Transplant2010
20817775Genome-wide analysis of novel splice variants induced by topoisomerase I poisoning shows preferential occurrence in genes encoding splicing factors.Cancer Res2010
18638396SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.BMC Bioinformatics2008
18295320The EDGE hypothesis: epigenetically directed genetic errors in repeat-containing proteins (RCPs) involved in evolution, neuroendocrine signaling, and cancer.Front Neuroendocrinol2008
18230172VennMaster: area-proportional Euler diagrams for functional GO analysis of microarrays.BMC Bioinformatics2008
17338820SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis.BMC Bioinformatics2007
17660211AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.Bioinformatics2007
16672307Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling.Genome Res2006
16288013The p53 tumor suppressor network is a key responder to microenvironmental components of chronic inflammatory stress.Cancer Res2005
16041372Nova regulates brain-specific splicing to shape the synapse.Nat Genet2005
15998470High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).BMC Bioinformatics2005
15214961Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics.BMC Bioinformatics2004
15342794Analysis of ATP-binding cassette transporter expression in drug-selected cell lines by a microarray dedicated to multidrug resistance.Mol Pharmacol2004
12702208MatchMiner: a tool for batch navigation among gene and gene product identifiers.Genome Biol2003
14728344Development of gene ontology tool for biological interpretation of genomic and proteomic data.AMIA Annu Symp Proc2003
12702209GoMiner: a resource for biological interpretation of genomic and proteomic data.Genome Biol2003
12477932Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.Proc Natl Acad Sci U S A2002
12045147Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes.Genome Research2002
10760492In vitro and in vivo m2 muscarinic subtype selectivity of some dibenzodiazepinones and pyridobenzodiazepinones.Brain Research2000
10628560Pharmacokinetic computer simulations of the relationship between in vivo and in vitro neuroreceptor subtype selectivity of radioligands.Nuclear Medicine and Biology1999
9826782In vivo competition studies of Z-(-,-)-[125I]IQNP against 3-quinuclidinyl 2-(5-bromothienyl)-2-thienylglycolate (BrQNT) demonstrating in vivo m2 muscarinic subtype selectivity for BrQNT.Journal of Molecular Neuroscience1998
9285530In vivo autoradiographic competition studies of isomers of [125I]IQNP against QNB demonstrating in vivo m2 muscarinic subtype selectivity for QNB.Receptors & signal transduction1997
9322030Identifying chimerism in proteins using hidden Markov models of codon usage.Proc Int Conf Intell Syst Mol Biol1997
9106987Correction of the stereochemical assignment of the benzilic acid center in (R)-(-)-3-quinuclidinyl (S)-(+)-4-iodobenzilate [(R,S)-4-IQNB].Applied Radiation and Isotopes1997
9022211In vivo autoradiography of radioiodinated (R)-3-quinuclidinyl (S)-4-iodobenzilate [(R, S)-IQNB] and (R)-3-quinuclidinyl (R)-4-iodobenzilate [(R,R)-IQNB]. Comparison of the radiolabelled products of a novel tributylstannyl precursor with those of the estabApplied Radiation and Isotopes1997
8782228Specific binding component of the "inactive" stereoisomer (S,S)-[125I] IQNB to rat brain muscarinic receptors in vivo.Nuclear Medicine and Biology1996
8971856Autoradiographic evidence that (R)-3-quinuclidinyl (S)-4-fluoromethylbenzilate ((R,S)-FMeQNB) displays in vivo selectivity for the muscarinic m2 subtype.Nuclear Medicine and Biology1996
8933619In vivo autoradiographic and dissection evaluation of isomers of 125I-labeled 1-azabicyclo[2.2.2] oct-3-yl-alpha-(1-iodo-1-propen-3-yl)-alpha-phenylacetate (IQNP).Receptors & signal transduction1996
9345473Autoradiographic evidence that 3-quinuclidinyl-4-fluorobenzilate (FQNB) displays in vivo selectivity for the m2 subtype.NeuroImage1996
8782236Evaluation of 1-azabicyclo[2.2.2]oct-3-yl alpha-fluoroalkyl-alpha-hydroxy-alpha-phenylacetates as potential ligands for the study of muscarinic receptor density by positron emission tomography.Nuclear Medicine and Biology1996
7562924Resolution and in vitro and initial in vivo evaluation of isomers of iodine-125-labeled 1-azabicyclo[2.2.2]oct-3-yl alpha-hydroxy-alpha-(1-iodo-1-propen-3-yl)-alpha-phenylacetate: a high-affinity ligand for the muscarinic receptor.Journal of Medicinal Chemistry1995
18215865Theoretical relationships of receptor and delivery sensitivities and measurable parameters in in vivo neuroreceptor-radioligand interactions.IEEE Transactions on Medical Imaging1995
9343604Autoradiographic evidence that quinuclidinyl 4-(bromophenyl)-2-thienylglycolate (QBPTG) displays in vivo selectivity for the muscarinic m2 subtype.NeuroImage1995
9343590Autoradiographic evidence that QNB displays in vivo selectivity for the m2 subtype.NeuroImage1995
8840399Comparison of the in vivo rat brain regional pharmacokinetics of [3H]QNB, (R,S)-[125I]-4IQNB, and (R,R)-[125I]-4IQNB binding to the muscarinic acetylcholine receptor in relationship to the regional subtype composition.1995
7583315Characterization of in vivo brain muscarinic acetylcholine receptor subtype selectivity by competition studies against (R,S)-[125I]IQNB.Brain Research1995
8196489Muscarinic receptor selectivities of 3-Quinuclidinyl 8-xanthenecarboxylate (QNX) in rat brain.Life Sciences1994
7968217[3H]QNB displays in vivo selectivity for the m2 subtype.Life Sciences1994
8372106Evaluation of reconstruction algorithms in SPECT neuroimaging: I. Comparison of statistical noise in SPECT neuroimages with 'naive' and 'realistic' predictions.Physics in Medicine and Biology1993
18218442Estimation of relative regional neuroreceptor concentration by PET or SPECT: Theoretical comparisons of using a single late image or a late plus early image.IEEE Transactions on Medical Imaging1993
8372107Evaluation of reconstruction algorithms in SPECT neuroimaging: II. Computation of deterministic and statistical error components.Physics in Medicine and Biology1993
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Georgia Institute of Technology
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National Human Genome Research Institute, National Institutes of Health
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National Cancer Institute
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Gustave Roussy Cancer Center, INSERM U1170
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HudsonAlpha Institute for Biotechnology
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and Blood Institute, National Institutes of Health
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University of British Columbia
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