Author details

Full Name

Andrew McPherson

Affiliation

Memorial Sloan Kettering Cancer Center

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36711951	Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations.	bioRxiv	2023
37090647	Single-cell DNA replication dynamics in genomically unstable cancers.	bioRxiv	2023
37474509	Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector.	Nat Commun	2023
37327118	Immune profiling after allogeneic hematopoietic cell transplantation in pediatric acute myeloid leukemia.	Blood Adv	2023
36626250	Tracking the evolution of therapy-related myeloid neoplasms using chemotherapy signatures.	Blood	2023
36289203	Clonal somatic copy number altered driver events inform drug sensitivity in high-grade serous ovarian cancer.	Nat Commun	2022
35764743	Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer.	Nat Cancer	2022
36517593	Ovarian cancer mutational processes drive site-specific immune evasion.	Nature	2022
36289342	Single-cell genomic variation induced by mutational processes in cancer.	Nature	2022
34163070	Clonal fitness inferred from time-series modelling of single-cell cancer genomes.	Nature	2021
34115989	Tim-4[+] cavity-resident macrophages impair anti-tumor CD8[+] T cell immunity.	Cancer Cell	2021
31623682	Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses.	Genome Biol	2019
31501550	Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling.	Nat Methods	2019
28630229	Observing Clonal Dynamics across Spatiotemporal Axes: A Prelude to Quantitative Fitness Models for Cancer.	Cold Spring Harb Perspect Med	2018
29754820	Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer.	Cell	2018
29267878	Computational identification of micro-structural variations and their proteogenomic consequences in cancer.	Bioinformatics	2018
28557980	E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.	Nat Methods	2017
28436987	Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes.	Nat Genet	2017
28985744	Correction to: ReMixT: clone-specific genomic structure estimation in cancer.	Genome Biol	2017
28750660	ReMixT: clone-specific genomic structure estimation in cancer.	Genome Biol	2017
26813401	A survey of best practices for RNA-seq data analysis.	Genome Biol	2016
27959929	Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study.	PLoS Med	2016
27565134	Erratum to: A survey of best practices for RNA-seq data analysis.	Genome Biol	2016
27183439	Clonal genotype and population structure inference from single-cell tumor sequencing.	Nat Methods	2016
27182968	Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer.	Nat Genet	2016
25568283	Clonality inference in multiple tumor samples using phylogeny.	Bioinformatics	2015
26005866	Spatial genomic heterogeneity within localized, multifocal prostate cancer.	Nat Genet	2015
25470049	Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution.	Nature	2015
24497532	Genomic rearrangements involving programmed death ligands are recurrent in primary mediastinal large B-cell lymphoma.	Blood	2014
25060187	TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.	Genome Res	2014
25155515	Heterogeneity in the inter-tumor transcriptome of high risk prostate cancer.	Genome Biol	2014
22294438	Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer.	J Pathol	2012
22745232	nFuse: discovery of complex genomic rearrangements in cancer using high-throughput sequencing.	Genome Res	2012
22927308	Poly-gene fusion transcripts and chromothripsis in prostate cancer.	Genes Chromosomes Cancer	2012
22495314	The clonal and mutational evolution spectrum of primary triple-negative breast cancers.	Nature	2012
22553170	From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer.	J Pathol	2012
22223660	14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma.	Proc Natl Acad Sci U S A	2012
20962326	Genome-wide identification of human microRNAs located in leukemia-associated genomic alterations.	Blood	2011
22048523	Simultaneous structural variation discovery among multiple paired-end sequenced genomes.	Genome Res	2011
21628414	Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells.	Blood	2011
21625565	deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.	PLoS Comput Biol	2011
21368758	MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers.	Nature	2011
21478487	Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.	Bioinformatics	2011
20942669	ARID1A mutations in endometriosis-associated ovarian carcinomas.	N Engl J Med	2010

1 - 44 of 44

Sebastian Uhrig

National Center for Tumor Diseases (NCT), German Cancer Research Center (DKFZ)

Career Start Year 2016

Number of shared co-authors 5

Zachary L Skidmore

Washington University in St. Louis School of Medicine

Career Start Year 2015

Number of shared co-authors 3

Daniel Vod??k

Institute for Cancer Research, Oslo University Hospital

Career Start Year 2014

Number of shared co-authors 7

Stefan C Dentro

Wellcome Sanger Institute

Career Start Year 2012

Number of shared co-authors 8

Gunes Gundem

Memorial Sloan Kettering Cancer Center

Career Start Year 2010

Number of shared co-authors 14

Christopher A Miller

Washington University School of Medicine

Career Start Year 2009

Number of shared co-authors 9

Davide Prandi

University of Trento

Career Start Year 2009

Number of shared co-authors 9

Cyriac Kandoth

University of California los angeles

Career Start Year 2008

Number of shared co-authors 20

Alessandro Romanel

University of Trento

Career Start Year 2008

Number of shared co-authors 6

Giovanni Ciriello

University of Lausanne (UNIL)

Career Start Year 2008

Number of shared co-authors 11

Moritz Gerstung

German Cancer Research Centre DKFZ

Career Start Year 2007

Number of shared co-authors 10

Ken Chen

University of Texas MD Anderson Cancer Center

Career Start Year 2007

Number of shared co-authors 14

David C Wedge

Manchester Cancer Research Centre, University of Manchester

Career Start Year 2006

Number of shared co-authors 15

Nicola Waddell

QIMR Berghofer Medical Research Institute

Career Start Year 2006

Number of shared co-authors 25

Susanna L Cooke

Institute of Cancer Sciences, University of Glasgow

Career Start Year 2006

Number of shared co-authors 19

Ayshwarya Subramanian

Broad Institute of MIT and Harvard

Career Start Year 2006

Number of shared co-authors 3

Markus Riester

Novartis Institutes for BioMedical Research

Career Start Year 2005

Number of shared co-authors 1

James Hicks

Michelson Center for Convergent Bioscience, University of Southern California

Career Start Year 2004

Number of shared co-authors 11

Keiran Raine

Wellcome Sanger Institute

Career Start Year 2004

Number of shared co-authors 20

Chip Stewart

Broad Institute of MIT and Harvard

Career Start Year 2004

Number of shared co-authors 14

Peter Van Loo

The Francis Crick Institute

Career Start Year 2003

Number of shared co-authors 22

Olivier Harismendy

University of California

Career Start Year 2003

Number of shared co-authors 4

Trevor J Pugh

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2003

Number of shared co-authors 33

Peter J Campbell

Wellcome Sanger Institute

Career Start Year 2003

Number of shared co-authors 34

Jianhua Zhang

University of Texas MD Anderson Cancer Center

Career Start Year 2003

Number of shared co-authors 5

Benjamin J Raphael

Princeton University

Career Start Year 2003

Number of shared co-authors 22

Luciano G Martelotto

Monash University

Career Start Year 2000

Number of shared co-authors 18

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Career Start Year 2000

Number of shared co-authors 21

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1997

Number of shared co-authors 18

Adam Butler

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 23

row(s) 1 - 30 of 30

Sohrab P Shah

Memorial Sloan Kettering Cancer Center

Co-authored papers 26

Samuel Aparicio

University of British Columbia

Co-authored papers 17

Marco A Marra

University of British Columbia

Co-authored papers 16

Suleyman Cenk Sahinalp

National Cancer Institute, National Institutes of Health

Co-authored papers 12

David G Huntsman

University of British Columbia

Co-authored papers 11

Richard A Moore

Co-authored papers 9

Colin C Collins

University of British Columbia

Co-authored papers 8

Ali Bashashati

University of British Columbia

Co-authored papers 7

Leah M Prentice

British Columbia Women's Hospital and Health Centre

Co-authored papers 6

Andrew J Mungall

Co-authored papers 6

Yongjun Zhao

Canada British Columbia Cancer Research Centre, University of British Columbia

Co-authored papers 6

Cydney B Nielsen

Co-authored papers 6

Steven J M Jones

University of British Columbia

Co-authored papers 6

Cyril B Gilks

University of British Columbia

Co-authored papers 6

Martin Hirst

University of British Columbia

Co-authored papers 5

Diljot Grewal

Memorial Sloan Kettering Cancer Center

Co-authored papers 5

Stanislav V Volik

University of British Columbia

Co-authored papers 5

Jamie Rosner

University of British Columbia

Co-authored papers 5

Alexander W Wyatt

University of British Columbia

Co-authored papers 5

Faraz Hach

University of British Columbia

Co-authored papers 5

Anna Lapuk

Contextual Genomics Inc.

Co-authored papers 5

Yuzhuo Wang

University of British Columbia

Co-authored papers 5

Chunxiao Wu

Shandong Provincial Hospital, Cheeloo College of Medicine, Shandong University

Co-authored papers 5

Fereydoun Hormozdiari

University of California davis

Co-authored papers 5

Martin E Gleave

University of British Columbia

Co-authored papers 4

Janine Senz

University of British Columbia

Co-authored papers 4

Brian McConeghy

University of British Columbia

Co-authored papers 4

Iman Hajirasouliha

Institute for Computational Biomedicine

Co-authored papers 4

Fan Mo

Institute of Stem Cell and Regeneration, Chinese Academy of Sciences

Co-authored papers 4

Robert Shukin

University of British Columbia

Co-authored papers 4

1 - 30

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