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Author Details

Atanas Kamburov
Broad Institute of Harvard and MIT
2007
42
29
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34850110ConsensusPathDB 2022: molecular interactions update as a resource for network biology.Nucleic Acids Res2022
36041373Prognosis and oncogenomic profiling of patients with tropomyosin receptor kinase fusion cancer in the 100,000 genomes project.Cancer Treat Res Commun2022
32927263Identification of Small Molecules that Modulate Mutant p53 Condensation.iScience2020
29980530<i>ERCC2</i> Helicase Domain Mutations Confer Nucleotide Excision Repair Deficiency and Drive Cisplatin Sensitivity in Muscle-Invasive Bladder Cancer.Clin Cancer Res2019
31816062Genomic analyses of flow-sorted Hodgkin Reed-Sternberg cells reveal complementary mechanisms of immune evasion.Blood Adv2019
31697821Genomic analyses of PMBL reveal new drivers and mechanisms of sensitivity to PD-1 blockade.Blood2019
29200198NetSig: network-based discovery from cancer genomes.Nat Methods2018
30115664Preclinical Efficacy of the Novel Monocarboxylate Transporter 1 Inhibitor BAY-8002 and Associated Markers of Resistance.Mol Cancer Ther2018
29955181Publisher Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.Nat Med2018
29955182Author Correction: Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.Nat Med2018
29717118Distinct mutational signatures characterize concurrent loss of polymerase proofreading and mismatch repair.Nat Commun2018
29713087Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.Nat Med2018
28652578Rare germline variants in ATM are associated with chronic lymphocytic leukemia.Leukemia2017
29232558High-throughput Phenotyping of Lung Cancer Somatic Mutations.Cancer Cell2017
28825726A mutational signature reveals alterations underlying deficient homologous recombination repair in breast cancer.Nat Genet2017
28714987Comparison of algorithms for the detection of cancer drivers at subgene resolution.Nat Methods2017
28892075Analysis of somatic microsatellite indels identifies driver events in human tumors.Nat Biotechnol2017
27074805ToxDB: pathway-level interpretation of drug-treatment data.Database (Oxford)2016
27760319Phenotypic Characterization of a Comprehensive Set of MAPK1/ERK2 Missense Mutants.Cell Rep2016
27606777Analyzing and interpreting genome data at the network level with ConsensusPathDB.Nat Protoc2016
27478040High-throughput Phenotyping of Lung Cancer Somatic Mutations.Cancer Cell2016
27147599Systematic Functional Interrogation of Rare Cancer Variants Identifies Oncogenic Alleles.Cancer Discov2016
26806129Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.Cell2016
27111033Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors.Nat Genet2016
25910212Widespread macromolecular interaction perturbations in human genetic disorders.Cell2015
26392535Comprehensive assessment of cancer missense mutation clustering in protein structures.Proc Natl Acad Sci U S A2015
25416956A proteome-scale map of the human interactome network.Cell2014
23143270The ConsensusPathDB interaction database: 2013 update.Nucleic Acids Res2013
23505349Dual coordination of post translational modifications in human protein networks.PLoS Comput Biol2013
22346341Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome.Evol Bioinform Online2012
23050565Cluster-based assessment of protein-protein interaction confidence.BMC Bioinformatics2012
22649056IntScore: a web tool for confidence scoring of biological interactions.Nucleic Acids Res2012
22568834DIPSBC--data integration platform for systems biology collaborations.BMC Bioinformatics2012
22365833Dynamic protein-protein interaction wiring of the human spliceosome.Mol Cell2012
21071422ConsensusPathDB: toward a more complete picture of cell biology.Nucleic Acids Res2011
21873647Human embryonic stem cell derived hepatocyte-like cells as a tool for in vitro hazard assessment of chemical carcinogenicity.Toxicol Sci2011
21893519Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.Bioinformatics2011
21483477Consensus-phenotype integration of transcriptomic and metabolomic data implies a role for metabolism in the chemosensitivity of tumour cells.PLoS Comput Biol2011
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
20847220Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.Bioinformatics2010
18940869ConsensusPathDB--a database for integrating human functional interaction networks.Nucleic Acids Res2009
18081932Denoising inferred functional association networks obtained by gene fusion analysis.BMC Genomics2007
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Collaborators

Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 18
Ralf Herwig
Max Planck Institute for Molecular Genetics
Co-authored papers 14
Michael S Lawrence
Co-authored papers 10
Jaegil Kim
Co-authored papers 9
Todd R Golub
Broad Institute of MIT and Harvard
Co-authored papers 8
Ignaty Leshchiner
Broad Institute of Massachusetts Institute of Technology and Harvard
Co-authored papers 6
Paz Polak
McGill University
Co-authored papers 6
Esther Rheinbay
Co-authored papers 6
Julian M Hess
Broad Institute of MIT and Harvard
Co-authored papers 6
Matthew Meyerson
Broad Institute
Co-authored papers 5
Aaron R Thorner
Co-authored papers 5
Matthew Ducar
Co-authored papers 5
Dimitri Livitz
Co-authored papers 5
Chip Stewart
Broad Institute of MIT and Harvard
Co-authored papers 5
Daniel Rosebrock
Co-authored papers 5
Jesse S Boehm
Broad Institute of Harvard and MIT
Co-authored papers 4
David E Root
Broad Institute of Harvard and MIT
Co-authored papers 4
Nicholas J Haradhvala
Co-authored papers 4
Mukta Bagul
Co-authored papers 4
Amaro Taylor-Weiner
Co-authored papers 4
Federica Piccioni
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Alan D D'Andrea
Dana-Farber Cancer Institute
Co-authored papers 4
Ted Natoli
Co-authored papers 3
John G Doench
Co-authored papers 3
Jeremiah Wala
The Broad Institute of MIT and Harvard
Co-authored papers 3
Aravind Subramanian
Co-authored papers 3
Reiner Siebert
Co-authored papers 3
Adam Tracy
Co-authored papers 3
Joshua D Campbell
Co-authored papers 3
Pablo Tamayo
University of California San Diego
Co-authored papers 3
Release 1.2