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Author Details

James Taylor
Johns Hopkins University
2004
86
46
PMIDPaper TitleJournal TitlePublished Year
37066352Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.bioRxiv2024
37066352Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes.bioRxiv2024
32307861Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community.Environ Microbiol2021
32307861Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community.Environ Microbiol2021
33583104Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.Curr Protoc2021
33583104Using Galaxy to Perform Large-Scale Interactive Data Analyses-An Update.Curr Protoc2021
31197310Cloud bursting galaxy: federated identity and access management.Bioinformatics2020
32024661The full-length transcriptome of <i>C. elegans</i> using direct RNA sequencing.Genome Res2020
31769130Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.IUBMB Life2020
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
33193201Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities.Front Microbiol2020
33079170A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.Gigascience2020
31197310Cloud bursting galaxy: federated identity and access management.Bioinformatics2020
32024661The full-length transcriptome of <i>C. elegans</i> using direct RNA sequencing.Genome Res2020
31769130Systematic integration of GATA transcription factors and epigenomes via IDEAS paints the regulatory landscape of hematopoietic cells.IUBMB Life2020
33193201Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities.Front Microbiol2020
33079170A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.Gigascience2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
30890172Measuring the reproducibility and quality of Hi-C data.Genome Biol2019
31607649Characterization of Button Loci that Promote Homologous Chromosome Pairing and Cell-Type-Specific Interchromosomal Gene Regulation.Dev Cell2019
34366521CloudLaunch: Discover and Deploy Cloud Applications.Future Gener Comput Syst2019
31273300Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert.ISME J2019
30890172Measuring the reproducibility and quality of Hi-C data.Genome Biol2019
34366521CloudLaunch: Discover and Deploy Cloud Applications.Future Gener Comput Syst2019
31273300Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert.ISME J2019
31607649Characterization of Button Loci that Promote Homologous Chromosome Pairing and Cell-Type-Specific Interchromosomal Gene Regulation.Dev Cell2019
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
34386295Federated Galaxy: Biomedical Computing at the Frontier.IEEE Int Conf Cloud Comput2018
30309916Thyroid hormone signaling specifies cone subtypes in human retinal organoids.Science2018
30219103MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.Microbiome2018
30201095Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery.Mol Cell2018
29953864Community-Driven Data Analysis Training for Biology.Cell Syst2018
29953862Practical Computational Reproducibility in the Life Sciences.Cell Syst2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
34386295Federated Galaxy: Biomedical Computing at the Frontier.IEEE Int Conf Cloud Comput2018
30219103MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.Microbiome2018
30201095Lamins Organize the Global Three-Dimensional Genome from the Nuclear Periphery.Mol Cell2018
29953864Community-Driven Data Analysis Training for Biology.Cell Syst2018
29953862Practical Computational Reproducibility in the Life Sciences.Cell Syst2018
30309916Thyroid hormone signaling specifies cone subtypes in human retinal organoids.Science2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
28542180Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.PLoS Comput Biol2017
28542180Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers.PLoS Comput Biol2017
29657298A Novel Long Non-Coding RNA in the hTERT Promoter Region Regulates hTERT Expression.Noncoding RNA2017
29251595Natural variation in stochastic photoreceptor specification and color preference in <i>Drosophila</i>.Elife2017
28178516Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes.Cell Rep2017
28178516Chromatin States in Mouse Sperm Correlate with Embryonic and Adult Regulatory Landscapes.Cell Rep2017
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Collaborators

Anton Nekrutenko
The Pennsylvania State University, University Park
Co-authored papers 36
Ross C Hardison
Co-authored papers 21
Daniel Blankenberg
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
Co-authored papers 20
Enis Afgan
Johns Hopkins University
Co-authored papers 16
Webb Miller
Co-authored papers 15
Jeremy Goecks
Oregon Health & Science University
Co-authored papers 14
Dave Clements
Johns Hopkins University
Co-authored papers 8
Yong Cheng
Co-authored papers 8
William James Kent
Co-authored papers 7
Kate R Rosenbloom
Co-authored papers 7
David C King
Co-authored papers 7
Mitchell J Weiss
Co-authored papers 5
Jennifer Hillman-Jackson
Co-authored papers 5
Cheryl A Keller
Co-authored papers 5
Belinda Giardine
Co-authored papers 5
George M Weinstock
The Genome Center at Washington University, Washington University School of Medicine
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John Chilton
The Pennsylvania State University, University Park
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Laura Elnitski
National Human Genome Research Institute
Co-authored papers 5
David Haussler
Genomics Institute, University of California Santa Cruz
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Weisheng Wu
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Olgert Denas
Emory University
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Evan E Eichler
University of Washington
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Roderic Guig??
Barcelona Institute of Science and Technology
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Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 4
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 4
Minmei Hou
Co-authored papers 4
Tina Graves
McDonnell Genome Institute, Washington University
Co-authored papers 4
Robert E Thurman
University of Washington
Co-authored papers 4
Job Dekker
University of Massachusetts Chan Medical School
Co-authored papers 4
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 4
Release 1.2