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Author Details

John C Earls
Institute for Systems Biology
2011
18
11
PMIDPaper TitleJournal TitlePublished Year
36941332Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention.Nat Med2023
33731896Author Correction: Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Nat Metab2021
33619379Gut microbiome pattern reflects healthy ageing and predicts survival in humans.Nat Metab2021
32192755Ageotypes: Distinct Biomolecular Trajectories in Human Aging.Trends Pharmacol Sci2020
32036085Analytical Performance of an Immunoprofiling Assay Based on RNA Models.J Mol Diagn2020
33171100Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19.Cell2020
33396819Identifying Personalized Metabolic Signatures in Breast Cancer.Metabolites2020
32817414Multiomic blood correlates of genetic risk identify presymptomatic disease alterations.Proc Natl Acad Sci U S A2020
32471946Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome.Proc Natl Acad Sci U S A2020
31477923Blood metabolome predicts gut microbiome α-diversity in humans.Nat Biotechnol2019
31724055Multi-Omic Biological Age Estimation and Its Correlation With Wellness and Disease Phenotypes: A Longitudinal Study of 3,558 Individuals.J Gerontol A Biol Sci Med Sci2019
30080845Reply to "Precision medicine in the clouds".Nat Biotechnol2018
28714965A wellness study of 108 individuals using personal, dense, dynamic data clouds.Nat Biotechnol2017
28365151A Cell-Surface Membrane Protein Signature for Glioblastoma.Cell Syst2017
28334820High resolution time-course mapping of early transcriptomic, molecular and cellular phenotypes in Huntington's disease CAG knock-in mice across multiple genetic backgrounds.Hum Mol Genet2017
23496976AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures.BMC Bioinformatics2013
23386717Cell type-specific genes show striking and distinct patterns of spatial expression in the mouse brain.Proc Natl Acad Sci U S A2013
21257608Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup.Bioinformatics2011
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Collaborators

Nathan D Price
Institute for Systems Biology
Co-authored papers 16
Leroy Hood
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 13
Andrew T Magis
Institute for Systems Biology
Co-authored papers 12
Gilbert S Omenn
and School of Public Health, University of Michigan ann arbor
Co-authored papers 6
Sean M Gibbons
Institute for Systems Biology
Co-authored papers 5
Gustavo Glusman
Institute for Systems Biology
Co-authored papers 4
James A Eddy
Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign
Co-authored papers 3
Younhee Ko
Hankuk University of Foreign Studies
Co-authored papers 3
Cory C Funk
Institute for Systems Biology
Co-authored papers 2
Joseph M Zmuda
University of Pittsburgh
Co-authored papers 2
Jack Wiedrick
Oregon Health & Science University
Co-authored papers 2
Eric S Orwoll
Metabolism and Clinical Nutrition, Oregon Health and Sciences University.
Co-authored papers 2
Jennifer J Hadlock
Institute for Systems Biology
Co-authored papers 2
Donald Geman
Johns Hopkins University
Co-authored papers 2
Jane A Cauley
School of Public Health, University of Pittsburgh
Co-authored papers 2
Seth A Ament
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 2
Juan Caballero
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Nancy E Lane
Center for Musculoskeletal Health, University of California Davis School of Medicine
Co-authored papers 2
Jodi Lapidus
School of Public Health, Oregon Health & Science University-Portland State University
Co-authored papers 2
Alan Aderem
Seattle Children's Research Institute
Co-authored papers 1
Mark M Davis
Co-authored papers 1
Ulrike Kusebauch
Institute for Systems Biology
Co-authored papers 1
Nicholas J Schork
University of California San Diego
Co-authored papers 1
Raphael Gottardo
Fred Hutchinson Cancer Center
Co-authored papers 1
James F Gusella
Co-authored papers 1
David Baxter
Co-authored papers 1
Guangrong Qin
Institute for Systems Biology
Co-authored papers 1
Theo A Knijnenburg
Allen Institute for Cell Science
Co-authored papers 1
James R Heath
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Release 1.2