Author details

Full Name

Laura Riva

Affiliation

Sanford Burnham Prebys Medical Discovery Institute

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34210369	Prenatal maternal stress during the COVID-19 pandemic and infant regulatory capacity at 3 months: A longitudinal study.	Dev Psychopathol	2023
36388765	Uncovering novel mutational signatures by <i>de novo</i> extraction with SigProfilerExtractor.	Cell Genom	2022
35809572	Recognition of HIV-1 capsid by PQBP1 licenses an innate immune sensing of nascent HIV-1 DNA.	Mol Cell	2022
35502318	Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.	iScience	2022
33440148	MDA5 Governs the Innate Immune Response to SARS-CoV-2 in Lung Epithelial Cells.	Cell Rep	2021
33784499	Antiviral drug screen identifies DNA-damage response inhibitor as potent blocker of SARS-CoV-2 replication.	Cell Rep	2021
33532779	Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets.	bioRxiv	2021
34709707	Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets.	Mol Syst Biol	2021
34556855	Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.	Nat Microbiol	2021
34468177	The Compound SBI-0090799 Inhibits Zika Virus Infection by Blocking <i>De Novo</i> Formation of the Membranous Replication Compartment.	J Virol	2021
34545363	Synthetic lethality-based prediction of anti-SARS-CoV-2 targets.	bioRxiv	2021
34155350	The clinicopathologic spectrum and genomic landscape of de-/trans-differentiated melanoma.	Mod Pathol	2021
34083527	Drug repurposing screens identify chemical entities for the development of COVID-19 interventions.	Nat Commun	2021
32511357	A Large-scale Drug Repositioning Survey for SARS-CoV-2 Antivirals.	bioRxiv	2020
31959748	Mutational signatures in tumours induced by high and low energy radiation in Trp53 deficient mice.	Nat Commun	2020
31776276	Viral Determinants in H5N1 Influenza A Virus Enable Productive Infection of HeLa Cells.	J Virol	2020
33052331	Clofazimine is a broad-spectrum coronavirus inhibitor that antagonizes SARS-CoV-2 replication in primary human cell culture and hamsters.	Res Sq	2020
32855398	Multi-site clonality analysis uncovers pervasive heterogeneity across melanoma metastases.	Nat Commun	2020
32707573	Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing.	Nature	2020
32989322	The mutational signature profile of known and suspected human carcinogens in mice.	Nat Genet	2020
31216647	Development of Personalized Therapeutic Strategies by Targeting Actionable Vulnerabilities in Metastatic and Chemotherapy-Resistant Breast Cancer PDXs.	Cells	2019
29985941	No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited mice.	PLoS Genet	2018
35135136	Precision Trial Drawer, a Computational Tool to Assist Planning of Genomics-Driven Trials in Oncology.	JCO Precis Oncol	2018
28025581	PML-RARA-associated cooperating mutations belong to a transcriptional network that is deregulated in myeloid leukemias.	Leukemia	2017
28569218	A knowledge-based framework for the discovery of cancer-predisposing variants using large-scale sequencing breast cancer data.	Breast Cancer Res	2017
28747664	Mutations targeting the coagulation pathway are enriched in brain metastases.	Sci Rep	2017
26860319	LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.	BMC Bioinformatics	2016
27779108	RNAi screens identify CHD4 as an essential gene in breast cancer growth.	Oncotarget	2016
27320920	InÂ Vivo Functional Platform Targeting Patient-Derived Xenografts Identifies WDR5-Myc Association as a Critical Determinant of Pancreatic Cancer.	Cell Rep	2016
27179036	In Vivo Genetic Screens of Patient-Derived Tumors Revealed Unexpected Frailty of the Transformed Phenotype.	Cancer Discov	2016
25499761	The hidden genomic landscape of acute myeloid leukemia: subclonal structure revealed by undetected mutations.	Blood	2015
26511446	Peak shape clustering reveals biological insights.	BMC Bioinformatics	2015
25850996	Whole exome sequencing identifies driver mutations in asymptomatic computed tomography-detected lung cancers with normal karyotype.	Cancer Genet	2015
25957348	INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.	Bioinformatics	2015
24658373	Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups.	Blood Cancer J	2014
25690659	DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes.	Genome Med	2014
25311739	The genomic and epigenomic landscapes of AML.	Semin Hematol	2014
24036946	Acute promyelocytic leukemias share cooperative mutations with other myeloid-leukemia subgroups.	Blood Cancer J	2013
22666660	Genomics of acute myeloid leukemia: the next generation.	Front Oncol	2012
23293686	Poly-glutamine expanded huntingtin dramatically alters the genome wide binding of HSF1.	J Huntingtons Dis	2012
19234470	Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity.	Nat Genet	2009
19941827	Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis.	Mol Cell	2009
15728662	Skeletal muscle gene expression profiling in mitochondrial disorders.	FASEB J	2005
15034146	Silencer elements as possible inhibitors of pseudoexon splicing.	Nucleic Acids Res	2004
15325254	Over-representation of exonic splicing enhancers in human intronless genes suggests multiple functions in mRNA processing.	Biochem Biophys Res Commun	2004
15358987	Effects of reboxetine on sleep and nocturnal cardiac autonomic activity in patients with dysthymia.	J Psychopharmacol	2004
14729831	A locus on 15q15-15qter influences dyslexia: further support from a transmission/disequilibrium study in an Italian speaking population.	J Med Genet	2004
12727896	Comparative analysis of vertebrate dystrophin loci indicate intron gigantism as a common feature.	Genome Res	2003

1 - 48 of 48

Ninad Oak

St. Jude Children's Research Hospital

Career Start Year 2014

Number of shared co-authors 1

Hiroko Tanaka

Tokyo Medical and Dental University

Career Start Year 2012

Number of shared co-authors 0

Daniel Bottomly

Knight Cancer Institute, Oregon Health & Science University

Career Start Year 2009

Number of shared co-authors 0

Siyuan Zheng

Greehey Children's Cancer Research Institute

Career Start Year 2007

Number of shared co-authors 2

Xiaotu Ma

St. Jude Children's Research Hospital

Career Start Year 2006

Number of shared co-authors 2

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 7

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 5

Semin Lee

Ulsan National Institute of Science and Technology (UNIST)

Career Start Year 2005

Number of shared co-authors 6

Jamie K Teer

H. Lee Moffitt Cancer Center and Research Institute

Career Start Year 2005

Number of shared co-authors 0

Catrina Fronick

McDonnell Genome Institute, Washington University in St. Louis School of Medicine

Career Start Year 2004

Number of shared co-authors 0

Matthias Schlesner

University of Augsburg

Career Start Year 2004

Number of shared co-authors 6

Michael D McLellan

McDonnell Genome Institute, Washington University in St. Louis

Career Start Year 2003

Number of shared co-authors 0

Jianmin Wang

Roswell Park Comprehensive Cancer Center

Career Start Year 2003

Number of shared co-authors 1

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 1

Vladimir Makarov

Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic

Career Start Year 2001

Number of shared co-authors 0

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Career Start Year 2000

Number of shared co-authors 10

Mariano J Alvarez

Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center

Career Start Year 2000

Number of shared co-authors 4

Celine Lefebvre

The Scripps Research Institute

Career Start Year 1999

Number of shared co-authors 2

Nuria Lopez-Bigas

Universitat Pompeu Fabra

Career Start Year 1999

Number of shared co-authors 10

Andrew J Gentles

Stanford Center for Biomedical Informatics Research, Stanford University

Career Start Year 1999

Number of shared co-authors 0

Alex Kentsis

Memorial Sloan-Kettering Cancer Center

Career Start Year 1998

Number of shared co-authors 1

Carrie Sougnez

The Broad Institute of Harvard and MIT

Career Start Year 1998

Number of shared co-authors 4

Li Ding

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1997

Number of shared co-authors 1

Benedikt Brors

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 6

Robert S Fulton

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1994

Number of shared co-authors 1

Marco A Marra

University of British Columbia

Career Start Year 1993

Number of shared co-authors 8

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 2

Todd R Golub

Broad Institute of MIT and Harvard

Career Start Year 1989

Number of shared co-authors 6

David A Wheeler

Baylor College of Medicine

Career Start Year 1984

Number of shared co-authors 11

Matthew Meyerson

Broad Institute

Career Start Year 1983

Number of shared co-authors 6

row(s) 1 - 30 of 30

Sumit K Chanda

The Scripps Research Institute

Co-authored papers 12

Laura Martin-Sancho

The Scripps Research Institute

Co-authored papers 10

Xin Yin

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 8

Yuan Pu

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 8

Paul D De Jesus

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 6

Adolfo Garc??a-Sastre

Icahn School of Medicine at Mount Sinai

Co-authored papers 6

David J Adams

Wellcome Sanger Institute

Co-authored papers 6

Eytan Ruppin

National Cancer Institute

Co-authored papers 5

Christopher Benner

Michigan State University College of Human Medicine

Co-authored papers 4

Lars Pache

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 4

Max W Chang

University of California San Diego

Co-authored papers 4

Randy A Albrecht

Icahn School of Medicine at Mount Sinai

Co-authored papers 3

Giuseppe Curigliano

University of Milan

Co-authored papers 3

Mattia Pelizzola

Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)

Co-authored papers 3

Ren Sun

University of California los angeles

Co-authored papers 3

Lisa Miorin

Icahn School of Medicine at Mount Sinai

Co-authored papers 3

Ernest Fraenkel

Co-authored papers 3

Judd F Hultquist

Northwestern University Feinberg School of Medicine

Co-authored papers 3

Ludmil B Alexandrov

Moores Cancer Center, university of california san diego

Co-authored papers 3

Kris M White

Quantitative Biosciences Institute (QBI) Coronavirus Research Group (QCRG)

Co-authored papers 2

David C Wedge

Manchester Cancer Research Centre, University of Manchester

Co-authored papers 2

Peter J Campbell

Wellcome Sanger Institute

Co-authored papers 2

Carmen Criscitiello

University of Milano

Co-authored papers 2

Fiorella Schischlik

National Cancer Institute, National Institutes of Health

Co-authored papers 2

Andrew I Su

The Scripps Research Institute

Co-authored papers 2

Ariel Rodriguez-Frandsen

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 2

Malina A Bakowski

a division of The Scripps Research Institute La Jolla

Co-authored papers 2

Jeffrey R Johnson

Gladstone Institutes

Co-authored papers 2

Timothy P Heffernan

Co-authored papers 2

Sunnie M Yoh

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 2

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators