|
| 38051927 | Commensal Oral Microbiota, Disease Severity, and Mortality in Fibrotic Lung Disease. | Am J Respir Crit Care Med | 2024 |
| 36378114 | The Gut Microbiome Modulates Body Temperature Both in Sepsis and Health. | Am J Respir Crit Care Med | 2023 |
| 37957375 | Robust airway microbiome signatures in acute respiratory failure and hospital-acquired pneumonia. | Nat Med | 2023 |
| 37872770 | Exploring the complex relationship between the lung microbiome and ventilator-associated pneumonia. | Expert Rev Respir Med | 2023 |
| 37087051 | In Patients With Sepsis, Initial Lactate Clearance Is Confounded Highly by Comorbidities and Poorly Predicts Subsequent Lactate Trajectory. | Chest | 2023 |
| 37169381 | Reply to: Anti-anaerobic antibiotics: indication is key. | Eur Respir J | 2023 |
| 36856712 | Immunocompromised Host Pneumonia: Definitions and Diagnostic Criteria: An Official American Thoracic Society Workshop Report. | Ann Am Thorac Soc | 2023 |
| 36853606 | Portable Breath-Based Volatile Organic Compound Monitoring for the Detection of COVID-19 During the Circulation of the SARS-CoV-2 Delta Variant and the Transition to the SARS-CoV-2 Omicron Variant. | JAMA Netw Open | 2023 |
| 36473273 | How to Understand a Revolution: Guts, Lungs, and Bronchiectasis. | Am J Respir Crit Care Med | 2023 |
| 36796848 | The gut microbiome in ARDS: from the "whether" and "what" to the "how". | Eur Respir J | 2023 |
| 36938368 | Rapid Real-time Squiggle Classification for Read until using RawMap. | Arch Clin Biomed Res | 2023 |
| 36229047 | In critically ill patients, anti-anaerobic antibiotics increase risk of adverse clinical outcomes. | Eur Respir J | 2023 |
| 34592317 | Racial Bias in Pulse Oximetry Measurement Among Patients About to Undergo Extracorporeal Membrane Oxygenation in 2019-2020: A Retrospective Cohort Study. | Chest | 2022 |
| 35549655 | Therapeutic Targeting of the Respiratory Microbiome. | Am J Respir Crit Care Med | 2022 |
| 35840782 | Ultra-rapid somatic variant detection via real-time targeted amplicon sequencing. | Commun Biol | 2022 |
| 35793817 | Racial bias and reproducibility in pulse oximetry among medical and surgical inpatients in general care in the Veterans Health Administration 2013-19: multicenter, retrospective cohort study. | BMJ | 2022 |
| 35695743 | SNIKT: sequence-independent adapter identification and removal in long-read shotgun sequencing data. | Bioinformatics | 2022 |
| 35681015 | AMAISE: a machine learning approach to index-free sequence enrichment. | Commun Biol | 2022 |
| 35446241 | Toll-Interacting Protein and Altered Lung Microbiota in Idiopathic Pulmonary Fibrosis. | Am J Respir Crit Care Med | 2022 |
| 36726705 | Development and Retention of Early-Career Clinician-Scientists through a Novel Peer Mentorship Program: Multidisciplinary Intensive Care Research Workgroup. | ATS Sch | 2022 |
| 35940658 | Response. | Chest | 2022 |
| 35944140 | Minimizing caging effects in murine lung microbiome studies. | Am J Physiol Lung Cell Mol Physiol | 2022 |
| 35157559 | Outcomes and Predictors of Severe Hyperoxemia in Patients Receiving Mechanical Ventilation: A Single-Center Cohort Study. | Ann Am Thorac Soc | 2022 |
| 35174248 | Breath analysis for detection and trajectory monitoring of acute respiratory distress syndrome in swine. | ERJ Open Res | 2022 |
| 35298489 | Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes. | PLoS One | 2022 |
| 34991717 | The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection. | Microbiome | 2022 |
| 35103557 | Update on the Features and Measurements of Experimental Acute Lung Injury in Animals: An Official American Thoracic Society Workshop Report. | Am J Respir Cell Mol Biol | 2022 |
| 33460570 | Lung microbiota predict chronic rejection in healthy lung transplant recipients: a prospective cohort study. | Lancet Respir Med | 2021 |
| 33547768 | Biological subphenotypes of acute respiratory distress syndrome may not reflect differences in alveolar inflammation. | Physiol Rep | 2021 |
| 33596387 | On Bugs and Blowholes: Why Is Aspiration the Rule, Not the Exception? | Am J Respir Crit Care Med | 2021 |
| 33818393 | Predicting Intensive Care Transfers and Other Unforeseen Events: Analytic Model Validation Study and Comparison to Existing Methods. | JMIR Med Inform | 2021 |
| 33591001 | Sepsis Subclasses: A Framework for Development and Interpretation. | Crit Care Med | 2021 |
| 33616663 | Feasibility of Embedding a Scalable, Virtually Enabled Biorepository in the Electronic Health Record for Precision Medicine. | JAMA Netw Open | 2021 |
| 33929301 | Nucleic Acid-based Testing for Noninfluenza Viral Pathogens in Adults with Suspected Community-acquired Pneumonia. An Official American Thoracic Society Clinical Practice Guideline. | Am J Respir Crit Care Med | 2021 |
| 33577740 | Comparing Clinical Features and Outcomes in Mechanically Ventilated Patients with COVID-19 and Acute Respiratory Distress Syndrome. | Ann Am Thorac Soc | 2021 |
| 34893078 | Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing. | Respir Res | 2021 |
| 34706748 | SquiggleNet: real-time, direct classification of nanopore signals. | Genome Biol | 2021 |
| 34580441 | Lung microbiota and COVID-19 severity. | Nat Microbiol | 2021 |
| 34159791 | Toll-like receptors, environmental caging, and lung dysbiosis. | Am J Physiol Lung Cell Mol Physiol | 2021 |
| 33941577 | Cage Environment Regulates Gut Microbiota Independent of Toll-Like Receptors. | Infect Immun | 2021 |
| 34218817 | Correction to: Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota. | Microbiome | 2021 |
| 33991456 | A novel swine model of the acute respiratory distress syndrome using clinically relevant injury exposures. | Physiol Rep | 2021 |
| 34326174 | Is the lung microbiome alive? Lessons from Antarctic soil. | Eur Respir J | 2021 |
| 34153197 | Selective Modulation of the Pulmonary Innate Immune Response Does Not Change Lung Microbiota in Healthy Mice. | Am J Respir Crit Care Med | 2021 |
| 34152440 | Metagenomics to Identify Pathogens in Diabetic Foot Ulcers and the Potential Impact for Clinical Care. | Curr Diab Rep | 2021 |
| 33952355 | Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota. | Microbiome | 2021 |
| 32126178 | Mechanical Stretch: An Important and Understudied Feature of Acute and Chronic Lung Injury. | Am J Respir Crit Care Med | 2020 |
| 31661299 | Methods in Lung Microbiome Research. | Am J Respir Cell Mol Biol | 2020 |
| 31973575 | Lung Microbiota Predict Clinical Outcomes in Critically Ill Patients. | Am J Respir Crit Care Med | 2020 |
| 33087334 | Electronic DNA Analysis of CSF Cell-free Tumor DNA to Quantify Multi-gene Molecular Response in Pediatric High-grade Glioma. | Clin Cancer Res | 2020 |