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Author Details

Fred P Davis
Howard Hughes Medical Institute
2004
40
27
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36427325A central role for STAT5 in the transcriptional programing of T helper cell metabolism.Sci Immunol2022
35486186The PV2 cluster of parvalbumin neurons in the murine periaqueductal gray: connections and gene expression.Brain Struct Funct2022
33657395MicroRNA-221 and -222 modulate intestinal inflammatory Th17 cell response as negative feedback regulators downstream of interleukin-23.Immunity2021
32343818Gene expression analysis in the mouse brainstem identifies Cart and Nesfatin as neuropeptides coexpressed in the Calbindin-positive neurons of the Nucleus papilio.Sleep2020
31939737A genetic, genomic, and computational resource for exploring neural circuit function.Elife2020
31959990Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report.Nat Med2020
33010223Rapid Enhancer Remodeling and Transcription Factor Repurposing Enable High Magnitude Gene Induction upon Acute Activation of NK Cells.Immunity2020
30650370Retinoic Acid Receptor Alpha Represses a Th9 Transcriptional and Epigenomic Program to Reduce Allergic Pathology.Immunity2019
31353223Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation.Immunity2019
30397017Nuclear Transcriptomes of the Seven Neuronal Cell Types That Constitute the <i>Drosophila</i> Mushroom Bodies.G3 (Bethesda)2019
29630598Odorant binding protein 69a connects social interaction to modulation of social responsiveness in Drosophila.PLoS Genet2018
28530713BACH2 immunodeficiency illustrates an association between super-enhancers and haploinsufficiency.Nat Immunol2017
28982762A dynamic interplay of enhancer elements regulates <i>Klf4</i> expression in naïve pluripotency.Genes Dev2017
28916644Subset- and tissue-defined STAT5 thresholds control homeostasis and function of innate lymphoid cells.J Exp Med2017
28623086The Transcription Factor T-bet Limits Amplification of Type I IFN Transcriptome and Circuitry in T Helper 1 Cells.Immunity2017
26949250Epigenomic landscapes of retinal rods and cones.Elife2016
27840106Evolved Repression Overcomes Enhancer Robustness.Dev Cell2016
27156451Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality.Cell2016
26087164Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.Neuron2015
26638065A Metabolic Switch for Th17 Pathogenicity.Cell2015
24596113NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.J Comp Neurol2014
24603302NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.Brain Behav Evol2014
23650565Transcription factors that convert adult cell identity are differentially polycomb repressed.PLoS One2013
22855560Cell type-specific genomics of Drosophila neurons.Nucleic Acids Res2012
21103609Proteome-wide prediction of overlapping small molecule and protein binding sites using structure.Mol Biosyst2011
22128821Gene expression analysis in the parvalbumin-immunoreactive PV1 nucleus of the mouse lateral hypothalamus.Eur J Neurosci2011
22153492Phosphorylation at the interface.Structure2011
20140189The overlap of small molecule and protein binding sites within families of protein structures.PLoS Comput Biol2010
18948282MODBASE, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2009
19414530A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas.Bioinformatics2009
17478513DBAli tools: mining the protein structure space.Nucleic Acids Res2007
17965183Host pathogen protein interactions predicted by comparative modeling.Protein Sci2007
17570147The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.BMC Bioinformatics2007
16381869MODBASE: a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2006
17096593Structural modeling of protein interactions by analogy: application to PSD-95.PLoS Comput Biol2006
16738133Protein complex compositions predicted by structural similarity.Nucleic Acids Res2006
15657096PIBASE: a comprehensive database of structurally defined protein interfaces.Bioinformatics2005
16081657Localization of protein-binding sites within families of proteins.Protein Sci2005
14681398MODBASE, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2004
15193311A structural perspective on protein-protein interactions.Curr Opin Struct Biol2004
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Collaborators

Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 12
John J O'Shea
National Institute of Arthritis, National Institutes of Health
Co-authored papers 10
Yuka Kanno
Co-authored papers 9
Han-Yu Shih
National Eye Institute, National Institutes of Health
Co-authored papers 6
Ursula Pieper
University of California san francisco
Co-authored papers 6
Narayanan Eswar
University of California at San Francisco
Co-authored papers 5
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 5
Mallur S Madhusudhan
Indian Institute of Science Education and Research Pune
Co-authored papers 4
Chen Yao
University of Texas Southwestern Medical Center
Co-authored papers 4
Andrea Rossi
Pfizer Inc.
Co-authored papers 4
Alejandro V Villarino
University of Miami Miller School of Medicine
Co-authored papers 4
Min-Yi Shen
National Chung Hsing University
Co-authored papers 3
Dmitry Korkin
Worcester Polytechnic Institute
Co-authored papers 3
Kan Jiang
Co-authored papers 3
Benjamin Webb
University of California san francisco
Co-authored papers 3
Hannes Braberg
University of California San Francisco
Co-authored papers 3
F??tima Al-Shahrour
Spanish National Cancer Research Centre (CNIO)
Co-authored papers 2
Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
Co-authored papers 2
David T Barkan
Novartis Institutes for BioMedical Research, Inc.
Co-authored papers 2
Eran A Mukamel
University of California San Diego
Co-authored papers 2
Mark A Urich
The Salk Institute for Biological Studies
Co-authored papers 2
Partha P Mitra
Center for Computational Brain Research, Indian Institute of Technology Madras
Co-authored papers 2
Rachel Karchin
Johns Hopkins University
Co-authored papers 2
Ryan Lister
Co-authored papers 2
Hans-Stefan Hofmann
Co-authored papers 2
Frank Alber
University of California los angeles
Co-authored papers 2
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 2
Joseph R Nery
The Salk Institute for Biological Studies
Co-authored papers 2
Todd M Preuss
Co-authored papers 2
Libusha Kelly
Albert Einstein College of Medicine
Co-authored papers 2
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