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Author Details

Steve Miller
University of CaliforniaSan Francisco
2007
94
37
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35311638Prolonged silent carriage, genomic virulence potential and transmission between staff and patients characterize a neonatal intensive care unit (NICU) outbreak of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA).Infect Control Hosp Epidemiol2023
37712060In host evolution of beta lactam resistance during active treatment for <i>Pseudomonas aeruginosa</i> bacteremia.Front Cell Infect Microbiol2023
36958034Powassan Virus Infection Detected by Metagenomic Next-Generation Sequencing, Ohio, USA.Emerg Infect Dis2023
37244468Which trial do we need? Plasma metagenomic next-generation sequencing to diagnose infections in patients with haematological malignancies and febrile neutropenia: proposal for a randomized-controlled trial.Clin Microbiol Infect2023
35883256Transfusion-Transmitted Cache Valley Virus Infection in a Kidney Transplant Recipient With Meningoencephalitis.Clin Infect Dis2023
35013591Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.Nat Microbiol2022
35766492COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme.J Clin Microbiol2022
35822346A consensus conference to define the utility of advanced infectious disease diagnostics in solid organ transplant recipients.Am J Transplant2022
35426225COVID-19 in vaccinated versus unvaccinated hematologic malignancy patients.Transpl Infect Dis2022
35818068Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.Genome Med2022
36016397Rotavirus Strain Trends in United States, 2009-2016: Results from the National Rotavirus Strain Surveillance System (NRSSS).Viruses2022
35879995A diagnostic classifier for gene expression-based identification of early Lyme disease.Commun Med (Lond)2022
36377882Genetic Predictive Factors for Nonsusceptible Phenotypes and Multidrug Resistance in Expanded-Spectrum Cephalosporin-Resistant Uropathogenic Escherichia coli from a Multicenter Cohort: Insights into the Phenotypic and Genetic Basis of Coresistance.mSphere2022
33436939Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification.Sci Rep2021
33542262Nasopharyngeal SARS-CoV-2 viral loads in young children do not differ significantly from those in older children and adults.Sci Rep2021
33758899Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation.medRxiv2021
33536218A diagnostic host response biosignature for COVID-19 from RNA profiling of nasal swabs and blood.Sci Adv2021
34969106The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis.Clin Chem2021
34934772A Rare Bird: Diagnosis of Psittacosis Meningitis by Clinical Metagenomic Next-Generation Sequencing.Open Forum Infect Dis2021
34515766Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.JAMA Neurol2021
33991487Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.Cell2021
34074327Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.Genome Med2021
33434394Disseminated Legionella micdadei infection in a liver transplant patient presenting as pulmonary nodules and a laryngeal lesion.Transpl Infect Dis2021
33169017Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.Nat Med2021
33330916Connecting the Dots: Translating the Vaginal Microbiome Into a Drug.J Infect Dis2021
33394052Performance Characteristics of a Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco.J Infect Dis2021
33261720Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab.Emerg Infect Dis2021
31619533Point-Counterpoint: Should We Be Performing Metagenomic Next-Generation Sequencing for Infectious Disease Diagnosis in the Clinical Laboratory?J Clin Microbiol2020
31907545Clinical Utility of Universal Broad-Range Polymerase Chain Reaction Amplicon Sequencing for Pathogen Identification: A Retrospective Cohort Study.Clin Infect Dis2020
31965087Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.Nat Microbiol2020
31932713Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.Nat Microbiol2020
33141913Navigating Clinical Utilization of Direct-from-Specimen Metagenomic Pathogen Detection: Clinical Applications, Limitations, and Testing Recommendations.Clin Chem2020
33112933Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.PLoS Pathog2020
33173911Performance characteristics of a rapid SARS-CoV-2 antigen detection assay at a public plaza testing site in San Francisco.medRxiv2020
32943630SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood.Nat Commun2020
32855547Evaluation of SARS-CoV-2 serology assays reveals a range of test performance.Nat Biotechnol2020
32601156Genomic Profiling of Evolving Daptomycin Resistance in a Patient with Recurrent Staphylococcus argenteus Sepsis.Antimicrob Agents Chemother2020
32738079Sepsis from an apheresis platelet contaminated with Acinetobacter calcoaceticus/baumannii complex bacteria and Staphylococcus saprophyticus after pathogen reduction.Transfusion2020
32908995Digital droplet PCR accurately quantifies SARS-CoV-2 viral load from crude lysate without nucleic acid purification.medRxiv2020
32651238Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays.J Clin Microbiol2020
32436571Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel.Clin Infect Dis2020
32300245CRISPR-Cas12-based detection of SARS-CoV-2.Nat Biotechnol2020
32513865Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.Science2020
32511617Association of COVID-19 Infections in San Francisco in Early March 2020 with Travel to New York and Europe.medRxiv2020
32511477SARS-CoV-2 seroprevalence and neutralizing activity in donor and patient blood from the San Francisco Bay Area.medRxiv2020
32511449Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay.medRxiv2020
31563940Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.Clin Infect Dis2020
30355154Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.Annu Rev Pathol2019
30239621Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children.Clin Infect Dis2019
31208781Gastroenteritis, Hepatitis, Encephalopathy, and Human Herpesvirus 6 Detection in an Immunocompetent Child: Benefits and Risks of Syndromic Multiplex Molecular Panel Testing.J Pediatr2019
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Collaborators

University of California-San Francisco
Co-authored papers 56
University of California San Francisco
Co-authored papers 22
Weill Institute for Neurosciences, University of California-San Francisco
Co-authored papers 13
University of Washington Medical Center
Co-authored papers 13
University of California San Francisco
Co-authored papers 12
Co-authored papers 11
Weill Institute for Neurosciences, University of California san francisco
Co-authored papers 7
University of California San Francisco
Co-authored papers 6
Scientific Services
Co-authored papers 5
Vitalant Research Institute
Co-authored papers 5
University of California San Francisco
Co-authored papers 5
University of California san francisco
Co-authored papers 4
University of California-San Francisco School of Medicine.
Co-authored papers 4
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 4
The Salk Institute for Biological Studies
Co-authored papers 4
Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Vitalant Research Institute
Co-authored papers 3
Institute of Immunity, Stanford University School of Medicine
Co-authored papers 3
Stanford University
Co-authored papers 3
Gladstone-UCSF Institute of Genomic Immunology
Co-authored papers 3
University of California los angeles
Co-authored papers 3
University of California San Francisco School of Medicine
Co-authored papers 3
Children's Hospital Los Angeles
Co-authored papers 3
Gladstone Institutes
Co-authored papers 2
University of California san francisco
Co-authored papers 2
Co-authored papers 2
Gladstone Institutes
Co-authored papers 2
Co-authored papers 2
University of California san francisco
Co-authored papers 2