Author details

Full Name

R S Hansen

Affiliation

University of Washington

ORCID

Career Start Year

1982

Papers

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
25693563	Integrative analysis of 111 reference human epigenomes.	Nature	2015
25972927	DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.	Epigenetics Chromatin	2015
25282150	A genome-wide map of adeno-associated virus-mediated human gene targeting.	Nat Struct Mol Biol	2014
25411453	Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.	Science	2014
25409831	Topologically associating domains are stable units of replication-timing regulation.	Nature	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
25409825	Conservation of trans-acting circuitry during mammalian regulatory evolution.	Nature	2014
22955617	The accessible chromatin landscape of the human genome.	Nature	2012
22955828	Systematic localization of common disease-associated variation in regulatory DNA.	Science	2012
22955618	An expansive human regulatory lexicon encoded in transcription factor footprints.	Nature	2012
21258320	Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.	Nature	2011
21791604	Analysis of human syndromes with disordered chromatin reveals the impact of heterochromatin on the efficacy of ATM-dependent G2/M checkpoint arrest.	Mol Cell Biol	2011
21957152	Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome.	Genome Res	2011
19966280	Sequencing newly replicated DNA reveals widespread plasticity in human replication timing.	Proc Natl Acad Sci U S A	2010
19997486	Dosage regulation of the active X chromosome in human triploid cells.	PLoS Genet	2009
17921506	An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals.	Hum Mol Genet	2007
17955361	Encoding PCR products with batch-stamps and barcodes.	Biochem Genet	2007
16426903	Constitutive phosphorylation of ATM in lymphoblastoid cell lines from patients with ICF syndrome without downstream kinase activity.	DNA Repair (Amst)	2006
16817970	Abnormal X: autosome ratio, but normal X chromosome inactivation in human triploid cultures.	BMC Genet	2006
16500999	Maintenance of X- and Y-inactivation of the pseudoautosomal (PAR2) gene SPRY3 is independent from DNA methylation and associated to multiple layers of epigenetic modifications.	Hum Mol Genet	2006
15710616	Hemimethylation and non-CpG methylation levels in a promoter region of human LINE-1 (L1) repeated elements.	J Biol Chem	2005
14673087	Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules.	Proc Natl Acad Sci U S A	2004
15377381	Normal histone modifications on the inactive X chromosome in ICF and Rett syndrome cells: implications for methyl-CpG binding proteins.	BMC Biol	2004
15459281	Molecular barcodes detect redundancy and contamination in hairpin-bisulfite PCR.	Nucleic Acids Res	2004
12925568	X inactivation-specific methylation of LINE-1 elements by DNMT3B: implications for the Lyon repeat hypothesis.	Hum Mol Genet	2003
12444103	Allelic inactivation of the pseudoautosomal gene SYBL1 is controlled by epigenetic mechanisms common to the X and Y chromosomes.	Hum Mol Genet	2002
12900541	ICF syndrome cells as a model system for studying X chromosome inactivation.	Cytogenet Genome Res	2002
12411943	A new regulatory pathway for fragile X syndrome?	Nat Med	2002
11702227	Satellite 2 methylation patterns in normal and ICF syndrome cells and association of hypomethylation with advanced replication.	Hum Genet	2001
11063717	Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant.	Hum Mol Genet	2000
11102980	Genetic variation in ICF syndrome: evidence for genetic heterogeneity.	Hum Mutat	2000
11196131	Analysis of replication timing at the FRA10B and FRA16B fragile site loci.	Chromosome Res	2000
10588719	The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.	Proc Natl Acad Sci U S A	1999
10332041	The timing of XIST replication: dominance of the domain.	Hum Mol Genet	1999
9892682	DNA methylation in transcriptional repression of two differentially expressed X-linked genes, GPC3 and SYBL1.	Proc Natl Acad Sci U S A	1999
9736721	Very late DNA replication in the human cell cycle.	Proc Natl Acad Sci U S A	1998
9560241	Reactivation of XIST in normal fibroblasts and a somatic cell hybrid: abnormal localization of XIST RNA in hybrid cells.	Proc Natl Acad Sci U S A	1998
9114034	A variable domain of delayed replication in FRAXA fragile X chromosomes: X inactivation-like spread of late replication.	Proc Natl Acad Sci U S A	1997
9169463	5-Azadeoxycytidine-induced chromatin remodeling of the inactive X-linked HPRT gene promoter occurs prior to transcription factor binding and gene reactivation.	J Biol Chem	1997
8872476	Role of late replication timing in the silencing of X-linked genes.	Hum Mol Genet	1996
7633440	Reverse replication timing for the XIST gene in human fibroblasts.	Hum Mol Genet	1995
8634700	Allele-specific replication timing in imprinted domains: absence of asynchrony at several loci.	Hum Mol Genet	1995
7956079	Chromosomal fragile sites: molecular test of the delayed-replication model.	Cold Spring Harb Symp Quant Biol	1993
8324827	Association of fragile X syndrome with delayed replication of the FMR1 gene.	Cell	1993
1301165	Methylation analysis of CGG sites in the CpG island of the human FMR1 gene.	Hum Mol Genet	1992
1380647	Hemimethylation and hypersensitivity are early events in transcriptional reactivation of human inactive X-linked genes in a hamster x human somatic cell hybrid.	Mol Cell Biol	1992
1693431	5-Azacytidine-induced reactivation of the human X chromosome-linked PGK1 gene is associated with a large region of cytosine demethylation in the 5' CpG island.	Proc Natl Acad Sci U S A	1990
2236038	Polymerase chain reaction-aided genomic sequencing of an X chromosome-linked CpG island: methylation patterns suggest clonal inheritance, CpG site autonomy, and an explanation of activity state stability.	Proc Natl Acad Sci U S A	1990
2842618	Purification of calmodulin-stimulated cyclic nucleotide phosphodiesterase by monoclonal antibody affinity chromatography.	Methods Enzymol	1988
2850467	Demethylation of specific sites in the 5' region of the inactive X-linked human phosphoglycerate kinase gene correlates with the appearance of nuclease sensitivity and gene expression.	Mol Cell Biol	1988

1 - 50 of 57

Beatrice Bodega

University of Milan

Career Start Year 2004

Number of shared co-authors 3

Zachary D Smith

University of Maryland Baltimore County

Career Start Year 2004

Number of shared co-authors 3

Duncan Sproul

Institute of Genetics and Cancer, University of Edinburgh

Career Start Year 2004

Number of shared co-authors 0

Haiqing Fu

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Career Start Year 2003

Number of shared co-authors 0

Rituparna Mukhopadhyay

Albert Einstein College of Medicine

Career Start Year 2002

Number of shared co-authors 1

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 4

Ana Pombo

Polytechnic Institute of Leiria

Career Start Year 1994

Number of shared co-authors 2

Jeffrey J Delrow

Clinical Research Division, Fred Hutchinson Cancer Research Center

Career Start Year 1992

Number of shared co-authors 3

Larry D Mesner

Center for Public Health Genomics, University of Virginia

Career Start Year 1991

Number of shared co-authors 2

Edith Heard

Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934

Career Start Year 1989

Number of shared co-authors 4

Barbara Panning

University of California san francisco

Career Start Year 1989

Number of shared co-authors 2

Dieter Weichenhan

German Cancer Research Center (DKFZ)

Career Start Year 1988

Number of shared co-authors 2

Mirit I Aladjem

National Cancer Institute, Center for Cancer Research

Career Start Year 1988

Number of shared co-authors 0

Michael P Kladde

University of Florida

Career Start Year 1986

Number of shared co-authors 0

Jiannis Ragoussis

McGill University

Career Start Year 1986

Number of shared co-authors 3

Wolf Reik

The Babraham Institute

Career Start Year 1985

Number of shared co-authors 4

Kornel E Schuebel

National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 1

David E Symer

The University of Texas MD Anderson Cancer Center

Career Start Year 1984

Number of shared co-authors 1

Richard R Meehan

Institute of Genetics and Molecular Medicine, University of Edinburgh

Career Start Year 1984

Number of shared co-authors 0

Christoph Plass

German Cancer Research Center

Career Start Year 1982

Number of shared co-authors 2

Richard M Myers

HudsonAlpha Institute for Biotechnology

Career Start Year 1980

Number of shared co-authors 50

Danny Reinberg

HHMI/NYU Langone School of Medicine

Career Start Year 1980

Number of shared co-authors 3

Thomas W Glover

University of Michigan ann arbor

Career Start Year 1978

Number of shared co-authors 0

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 11

Raju Kucherlapati

Harvard Medical School

Career Start Year 1973

Number of shared co-authors 9

David R Cox

Rinat (Pfizer Inc.)

Career Start Year 1971

Number of shared co-authors 9

Gary S Stein

University of Vermont

Career Start Year 1968

Number of shared co-authors 2

David L Nelson

Baylor College of Medicine

Career Start Year 1968

Number of shared co-authors 9

Stephen B Baylin

Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University

Career Start Year 1963

Number of shared co-authors 6

Albert de la Chapelle

The Ohio State University Comprehensive Cancer Center

Career Start Year 1961

Number of shared co-authors 3

row(s) 1 - 30 of 30

Theresa K Canfield

University of Washington

Co-authored papers 20

John A Stamatoyannopoulos

Altius Institute for Biomedical Sciences

Co-authored papers 12

Richard Sandstrom

Altius Institute for Biomedical Sciences

Co-authored papers 11

Robert E Thurman

University of Washington

Co-authored papers 10

Peter J Sabo

University of Washington

Co-authored papers 8

Rajinder Kaul

Altius Institute for Biomedical Sciences

Co-authored papers 7

Daniel Bates

Altius Institute for Biomedical Sciences

Co-authored papers 6

Eric Haugen

Altius Institute for Biomedical Sciences

Co-authored papers 6

Shane Neph

Altius Institute for Biomedical Sciences

Co-authored papers 6

Morgan Diegel

Altius Institute for Biomedical Sciences

Co-authored papers 6

Erika Giste

University of Washington

Co-authored papers 6

Kristen Lee

Altius Institute for Biomedical Sciences

Co-authored papers 6

Jeff Vierstra

Altius Institute for Biomedical Sciences

Co-authored papers 6

Audra K Johnson

Altius Institute for Biomedical Sciences

Co-authored papers 6

Eric Rynes

Altius Institute for Biomedical Sciences

Co-authored papers 5

Alex P Reynolds

Altius Institute for Biomedical Sciences

Co-authored papers 5

Shinny Vong

University of Washington

Co-authored papers 5

Fidencio Neri

Altius Institute for Biomedical Sciences

Co-authored papers 5

Richard Humbert

University of Washington

Co-authored papers 5

Douglas Dunn

Altius Institute for Biomedical Sciences

Co-authored papers 5

Tanya Kutyavin

Altius Institute for Biomedical Sciences

Co-authored papers 4

Shamil R Sunyaev

Harvard Medical School

Co-authored papers 3

Anthony Shafer

University of Washington

Co-authored papers 3

Hao Wang

Altius Institute for Biomedical Sciences

Co-authored papers 3

Andrew B Stergachis

University of Washington School of Medicine

Co-authored papers 3

Cisca Wijmenga

Co-authored papers 3

Bing Ren

Center for Epigenomics, University of California San Diego

Co-authored papers 3

Piper M Treuting

University of Washington

Co-authored papers 3

Matthew T Maurano

Institute for Systems Genetics, NYU School of Medicine

Co-authored papers 3

Molly Weaver

University of Kentucky

Co-authored papers 3

1 - 30

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