Author details

Full Name

James A Foster

Affiliation

University of Idaho

ORCID

Career Start Year

1996

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34870283	No-boundary thinking: a viable solution to ethical data-driven AI in precision medicine.	AI Ethics	2022
35625559	Shell Disorder Models Detect That Omicron Has Harder Shells with Attenuation but Is Not a Descendant of the Wuhan-Hu-1 SARS-CoV-2.	Biomolecules	2022
35906926	Comprehensive Phylogenomics of Methylobacterium Reveals Four Evolutionary Distinct Groups and Underappreciated Phyllosphere Diversity.	Genome Biol Evol	2022
36291562	A Study on the Nature of SARS-CoV-2 Using the Shell Disorder Models: Reproducibility, Evolution, Spread, and Attenuation.	Biomolecules	2022
35073752	Fine-Scale Adaptations to Environmental Variation and Growth Strategies Drive Phyllosphere <i>Methylobacterium</i> Diversity.	mBio	2022
35142523	Computational, Experimental, and Clinical Evidence of a Specific but Peculiar Evolutionary Nature of (COVID-19) SARS-CoV-2.	J Proteome Res	2022
33691012	Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis.	Pac Symp Biocomput	2021
32254021	The skin microbiome facilitates adaptive tetrodotoxin production in poisonous newts.	Elife	2020
33006287	A Novel Strategy for the Development of Vaccines for SARS-CoV-2 (COVID-19) and Other Viruses Using AI and Viral Shell Disorder.	J Proteome Res	2020
32244041	Shell disorder analysis predicts greater resilience of the SARS-CoV-2 (COVID-19) outside the body and in body fluids.	Microb Pathog	2020
26776218	COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.	Pac Symp Biocomput	2016
27194550	Defining and simulating open-ended novelty: requirements, guidelines, and challenges.	Theory Biosci	2016
25332377	Seed: a user-friendly tool for exploring and visualizing microbial community data.	Bioinformatics	2015
26294933	Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis.	BioData Min	2015
25630378	MetAmp: combining amplicon data from multiple markers for OTU analysis.	Bioinformatics	2015
25651890	Network analysis suggests a potentially 'evil' alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities.	Sci Rep	2015
24498380	Machine learning techniques accurately classify microbial communities by bacterial vaginosis characteristics.	PLoS One	2014
26753179	Detecting Bacterial Vaginosis Using Machine Learning.	Proc 2014 ACM Southeast Reg Conf	2014
25914861	APPLYING MACHINE LEARNING TECHNIQUES IN DETECTING BACTERIAL VAGINOSIS.	Proc Int Conf Mach Learn Cybern	2014
25541628	GA-Based Selection of Vaginal Microbiome Features Associated with Bacterial Vaginosis.	Genet Evol Comput Conf	2014
24297567	Building the next generation of quantitative biologists.	Pac Symp Biocomput	2014
24404406	SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching.	J Data Mining Genomics Proteomics	2013
24451229	Estimation of viral richness from shotgun metagenomes using a frequency count approach.	Microbiome	2013
22174276	Estimating population diversity with unreliable low frequency counts.	Pac Symp Biocomput	2012
27182197	Guest editorial: special issue on selected papers from the European conference on genetic programming.	Genet Program Evolvable Mach	2012
22692220	mcaGUI: microbial community analysis R-Graphical User Interface (GUI).	Bioinformatics	2012
22911969	Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures.	mBio	2012
22562869	Gut microbial colonisation in premature neonates predicts neonatal sepsis.	Arch Dis Child Fetal Neonatal Ed	2012
22308073	Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life.	Brief Bioinform	2012
22333246	Estimating population diversity with CatchAll.	Bioinformatics	2012
21498398	OTUbase: an R infrastructure package for operational taxonomic unit data.	Bioinformatics	2011
21731083	Microbial Communities as Experimental Units.	Bioscience	2011
21695057	Characterization of the diversity and temporal stability of bacterial communities in human milk.	PLoS One	2011
21384168	Computing with bacterial constituents, cells and populations: from bioputing to bactoputing.	Theory Biosci	2011
20331770	Bacterial diversity in a glacier foreland of the high Arctic.	Mol Ecol	2010
19259330	Application of ecological network theory to the human microbiome.	Interdiscip Perspect Infect Dis	2008
17406775	MiCA: a web-based tool for the analysis of microbial communities based on terminal-restriction fragment length polymorphisms of 16S and 18S rRNA genes.	Microb Ecol	2007
18043622	Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.	ISME J	2007
16982706	Clearcut: a fast implementation of relaxed neighbor joining.	Bioinformatics	2006
17054080	The vaginal flora of healthy women is not always dominated by Lactobacillus species.	J Infect Dis	2006
16752216	Relaxed neighbor joining: a fast distance-based phylogenetic tree construction method.	J Mol Evol	2006
16894364	Guidelines: From artificial evolution to computational evolution: a research agenda.	Nat Rev Genet	2006
11389459	Evolutionary computation.	Nat Rev Genet	2001
9950704	Effects of Code Growth and Parsimony Pressure on Populations in Genetic Programming.	Evol Comput	1999
10030466	Effects of code growth and parsimony pressure on populations in genetic programming.	Evol Comput	1998
8576964	Computer simulation of transposable element evolution: random template and strict master models.	J Mol Evol	1996

1 - 46 of 46

Jose Manuel Mart??

Lawrence Livermore National Laboratory

Career Start Year 2015

Number of shared co-authors 0

Stephen Woloszynek

Beth Israel Deaconess Medical Center

Career Start Year 2012

Number of shared co-authors 1

Paul I Costea

Weizmann Institute of Science

Career Start Year 2012

Number of shared co-authors 0

David Koslicki

and the Huck Institutes of the Life Sciences, Penn State University, University Park

Career Start Year 2011

Number of shared co-authors 0

Antonio Gonzalez

University of California San Diego School of Medicine

Career Start Year 2011

Number of shared co-authors 1

Dan Knights

University of Minnesota

Career Start Year 2010

Number of shared co-authors 1

Chien-Chi Lo

Los Alamos National Laboratory

Career Start Year 2009

Number of shared co-authors 0

Nicola Segata

University of Trento

Career Start Year 2008

Number of shared co-authors 1

Daniel McDonald

University of California San Diego

Career Start Year 2007

Number of shared co-authors 1

Gail L Rosen

Drexel University

Career Start Year 2006

Number of shared co-authors 1

Bonnie L Hurwitz

The University of Arizona

Career Start Year 2006

Number of shared co-authors 0

Davide Albanese

Fondazione Edmund Mach

Career Start Year 2006

Number of shared co-authors 0

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Morgan G I Langille

Dalhousie University

Career Start Year 2004

Number of shared co-authors 1

Alice C McHardy

Computational Biology of Infection Research, Helmholtz Centre for Infection Research

Career Start Year 2003

Number of shared co-authors 3

Patrick D Schloss

University of Michigan ann arbor

Career Start Year 2003

Number of shared co-authors 1

Jeroen Raes

KU Leuven - University of Leuven

Career Start Year 2002

Number of shared co-authors 1

Alistair C Darby

Institute of Infection, University of Liverpool

Career Start Year 2000

Number of shared co-authors 0

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 1

Thomas Junier

Institute of Biology, University of Neuchatel

Career Start Year 1998

Number of shared co-authors 0

Shibu Yooseph

University of Central Florida

Career Start Year 1998

Number of shared co-authors 1

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Career Start Year 1998

Number of shared co-authors 2

Rob Knight

University of California

Career Start Year 1998

Number of shared co-authors 2

Anthony A Fodor

University of North Carolina at Charlotte

Career Start Year 1997

Number of shared co-authors 0

Susan Holmes

Stanford University

Career Start Year 1996

Number of shared co-authors 1

Aaron L Halpern

Illumina Inc.

Career Start Year 1995

Number of shared co-authors 0

Karen E Nelson

J. Craig Venter Institute, 9605 Medical Center Drive

Career Start Year 1995

Number of shared co-authors 1

Keith A Crandall

US National Museum of Natural History, Smithsonian Institution

Career Start Year 1992

Number of shared co-authors 0

Jonathan A Eisen

McLean Hospital

Career Start Year 1988

Number of shared co-authors 2

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1988

Number of shared co-authors 1

row(s) 1 - 30 of 30

Vladimir N Uversky

Morsani College of Medicine, University of South Florida

Co-authored papers 6

Alan Keith Dunker

Center for Computational Biology, Indiana University School of Medicine

Co-authored papers 6

Jason H Moore

Cedars-Sinai Medical Center

Co-authored papers 4

Matthew L Settles

University of California Davis Genome Center

Co-authored papers 3

Mitchell L Sogin

Co-authored papers 2

B Jesse Shapiro

McGill University

Co-authored papers 2

George A O'Toole

Geisel School of Medicine at Dartmouth

Co-authored papers 2

Juliette C Madan

Co-authored papers 2

Bruce A Stanton

Dartmouth College

Co-authored papers 2

Jack A Gilbert

Scripps Institution of Oceanography, University of California San Diego

Co-authored papers 1

Lawrence E Hunter

University of Colorado School of Medicine

Co-authored papers 1

Casey S Greene

Co-authored papers 1

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 1

Anna C Greene

Alex's Lemonade Stand Foundation

Co-authored papers 1

Deborah A Hogan

Geisel School of Medicine at Dartmouth

Co-authored papers 1

Andy D Perkins

Mississippi State University

Co-authored papers 1

Yana Bromberg

Rutgers University