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Author Details

Paul D Piehowski
Pacific Northwest National Laboratory
2008
81
28
PMIDPaper TitleJournal TitlePublished Year
37738504Mass Spectrometry-Based Proteogenomics: New Therapeutic Opportunities for Precision Medicine.Annu Rev Pharmacol Toxicol2024
36993277Coupling microdroplet-based sample preparation, multiplexed isobaric labeling, and nanoflow peptide fractionation for deep proteome profiling of tissue microenvironment.bioRxiv2023
37645907Robust collection and processing for label-free single voxel proteomics.bioRxiv2023
37390828Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunity.Cell Rep Med2023
34813325Evaluation of Differential Peptide Loading on Tandem Mass Tag-Based Proteomic and Phosphoproteomic Data Quality.J Am Soc Mass Spectrom2022
35838077Hanging drop sample preparation improves sensitivity of spatial proteomics.Lab Chip2022
35447087Determining protein polarization proteome-wide using physical dissection of individual Stentor coeruleus cells.Curr Biol2022
36591353Soluble ACE2 Is Filtered into the Urine.Kidney3602022
36244662Proteomic Profiling of Intra-Islet Features Reveals Substructure-Specific Protein Signatures.Mol Cell Proteomics2022
36303775Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.Front Bioinform2022
35896960Proteomic and phosphoproteomic measurements enhance ability to predict ex vivo drug response in AML.Clin Proteomics2022
32929967A Review of Imputation Strategies for Isobaric Labeling-Based Shotgun Proteomics.J Proteome Res2021
33511148Corrigendum: Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney.Front Med (Lausanne)2021
34407412CD63-mediated cloaking of VEGF in small extracellular vesicles contributes to anti-VEGF therapy resistance.Cell Rep2021
34642644A Pilot Study of Urine Proteomics in COVID-19-Associated Acute Kidney Injury.Kidney Int Rep2021
34132786efam: an expanded, metaproteome-supported HMM profile database of viral protein families.Bioinformatics2021
34244696Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation.Nat Protoc2021
34171263The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance.Cancer Cell2021
34056417Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH.ACS Omega2021
33951066Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region.PLoS One2021
32133426A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages.NanoImpact2020
31911630Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.Nat Commun2020
33078901Proteomic assessment of serum biomarkers of longevity in older men.Aging Cell2020
33072769Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney.Front Med (Lausanne)2020
32442648Longitudinal proteomics analysis in the immediate microenvironment of islet allografts during progression of rejection.J Proteomics2020
32175737Accurate Identification of Deamidation and Citrullination from Global Shotgun Proteomics Data Using a Dual-Search Delta Score Strategy.J Proteome Res2020
32407631Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling.J Proteome Res2020
32350400The National Microbiome Data Collaborative: enabling microbiome science.Nat Rev Microbiol2020
30507980New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.Analyst2019
31241912Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples.Anal Chem2019
31551400Nipah Virus-Like Particle Egress Is Modulated by Cytoskeletal and Vesicular Trafficking Pathways: a Validated Particle Proteomics Analysis.mSystems2019
31426316Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium <i>Synechococcus elongatus</i> UTEX 2973.Biomolecules2019
31227600An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation.Mol Cell Proteomics2019
31423480Increased β-cell proliferation before immune cell invasion prevents progression of type 1 diabetes.Nat Metab2019
30829647Glomerular filtrate proteins in acute cardiorenal syndrome.JCI Insight2019
30843680Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.Anal Chem2019
30460388Benchtop-compatible sample processing workflow for proteome profiling of &lt;â¿¿100 mammalian cells.Anal Bioanal Chem2019
28980276Quantitative Proteomic Analysis of Mass Limited Tissue Samples for Spatially Resolved Tissue Profiling.Methods Mol Biol2018
29941660Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets.Mol Cell Proteomics2018
30210768Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of &lt;1000 mammalian cells.Chem Sci2018
29908079Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia.Ann Neurol2018
30205969Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis.Tuberculosis (Edinb)2018
29899368Author Correction: Informed-Proteomics: open-source software package for top-down proteomics.Nat Methods2018
30087585Residual tissue repositories as a resource for population-based cancer proteomic studies.Clin Proteomics2018
30137212The human brainome: network analysis identifies HSPA2 as a novel Alzheimer&amp;rsquo;s disease target.Brain2018
30375896Nanoproteomics comes of age.Expert Rev Proteomics2018
30371667Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy.J Vis Exp2018
29576737Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples.Int J Mass Spectrom2018
29416036A transcriptomic atlas of aged human microglia.Nat Commun2018
29666158Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.Mol Cell Proteomics2018
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Collaborators

Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 39
Ronald J Moore
Co-authored papers 22
Wei-Jun Qian
Co-authored papers 22
Vladislav A Petyuk
Pacific Northwest National Laboratory
Co-authored papers 18
Daniel J Orton
Co-authored papers 15
Tao Liu
Pacific Northwest National Laboratory
Co-authored papers 13
Karin D Rodland
Oregon Health and Science University
Co-authored papers 12
Marina A Gritsenko
Pacific Northwest National Laboratory
Co-authored papers 12
Kristin E Burnum-Johnson
Pacific Northwest National Laboratory
Co-authored papers 12
Rui Zhao
Co-authored papers 10
Matthew E Monroe
Pacific Northwest National Laboratory
Co-authored papers 10
Tujin Shi
Pacific Northwest National Laboratory
Co-authored papers 10
Thomas L Fillmore
Pacific Northwest National Laboratory
Co-authored papers 9
Jon M Jacobs
Pacific Northwest National Laboratory
Co-authored papers 9
Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Co-authored papers 7
Anil K Shukla
Pacific Northwest National Laboratory
Co-authored papers 7
Joshua R Hansen
Pacific Northwest National Laboratory
Co-authored papers 7
Charles Ansong
Pacific Northwest National Laboratory
Co-authored papers 7
Erin S Baker
North Carolina State University
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Adam C Swensen
Co-authored papers 6
Karl K Weitz
Pacific Northwest National Laboratory
Co-authored papers 6
Samuel O Purvine
Pacific Northwest National Laboratory
Co-authored papers 6
Ernesto S Nakayasu
Co-authored papers 5
Yuqian Gao
Co-authored papers 5
Mary S Lipton
Pacific Northwest National Laboratory
Co-authored papers 5
Athena A Schepmoes
Pacific Northwest National Laboratory
Co-authored papers 5
Chia-Feng Tsai
Pacific Northwest National Laboratory
Co-authored papers 5
Lisa M Bramer
Co-authored papers 4
Joshua N Adkins
Co-authored papers 4
Rosalie K Chu
Co-authored papers 4
Release 1.2