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Author Details

Aakrosh Ratan
Center for Public Health Genomics, University of Virginia
2008
64
26
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36739308Prehistoric human migration between Sundaland and South Asia was driven by sea-level rise.Commun Biol2023
37894280The T Cell Immunoscore as a Reference for Biomarker Development Utilizing Real-World Data from Patients with Advanced Malignancies Treated with Immune Checkpoint Inhibitors.Cancers (Basel)2023
37077937Induction of PARP7 Creates a Vulnerability for Growth Inhibition by RBN2397 in Prostate Cancer Cells.Cancer Res Commun2023
36747810Structural variation across 138,134 samples in the TOPMed consortium.bioRxiv2023
36778386Structural variation across 138,134 samples in the TOPMed consortium.Res Sq2023
35106500Protocol for integrative subtyping of lower-grade gliomas using the SUMO pipeline.STAR Protoc2022
35403010Integrated bioinformatic pipeline using whole-exome and RNAseq data to identify germline variants correlated with cancer.STAR Protoc2022
35642301Genetic Variation in Reproductive Investment Across an Ephemerality Gradient in Daphnia pulex.Mol Biol Evol2022
35513723CCL22 mutations drive natural killer cell lymphoproliferative disease by deregulating microenvironmental crosstalk.Nat Genet2022
36481753Whole genome sequencing identifies structural variants contributing to hematologic traits in the NHLBI TOPMed program.Nat Commun2022
35962045Author Correction: Comparative and demographic analysis of orang-utan genomes.Nature2022
34951700Genomic analyses of the metastasis-derived prostate cancer cell lines LNCaP, VCaP, and PC3-AR.Prostate2022
35211690Detecting molecular subtypes from multi-omics datasets using SUMO.Cell Rep Methods2022
32682541Upregulation of human endogenous retrovirus-K (HML-2) mRNAs in hepatoblastoma: Identification of potential new immunotherapeutic targets and biomarkers.J Pediatr Surg2021
33846513Human ACE2 receptor polymorphisms and altered susceptibility to SARS-CoV-2.Commun Biol2021
33786423Germline variants predictive of tumor mutational burden and immune checkpoint inhibitor efficacy.iScience2021
34914532Pangenomics enables genotyping of known structural variants in 5202 diverse genomes.Science2021
33203571Germline Variants That Affect Tumor Progression.Trends Genet2021
32182236SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures.PLoS Comput Biol2020
32031213Functional Architecture of Deleterious Genetic Variants in the Genome of a Wrangel Island Mammoth.Genome Biol Evol2020
31907489The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.Nat Genet2020
31947841Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation.Cancers (Basel)2020
32066500The pan-cancer landscape of prognostic germline variants in 10,582 patients.Genome Med2020
33154504Novel genetic risk factors influence progression of islet autoimmunity to type 1 diabetes.Sci Rep2020
32637500Human endogenous retrovirus-K mRNA expression and genomic alignment data in hepatoblastoma.Data Brief2020
32879908Implementation of a Hamming distance-like genomic quantum classifier using inner products on ibmqx2 and ibmq_16_melbourne.Quantum Mach Intell2020
30651372The Germline Variants rs61757955 and rs34988193 Are Predictive of Survival in Lower Grade Glioma Patients.Mol Cancer Res2019
31809748Identification of African-Specific Admixture between Modern and Archaic Humans.Am J Hum Genet2019
31585620Genomics of LGL leukemia and select other rare leukemia/lymphomas.Best Pract Res Clin Haematol2019
31150060Augmented Interval List: a novel data structure for efficient genomic interval search.Bioinformatics2019
30914426Genomic Variants Among Threatened <i>Acropora</i> Corals.G3 (Bethesda)2019
30305041Genomic analysis of DNA repair genes and androgen signaling in prostate cancer.BMC Cancer2018
30055482Improved molecular karyotyping in glioblastoma.Mutat Res2018
29931218SONiCS: PCR stutter noise correction in genome-scale microsatellites.Bioinformatics2018
28666376A massively parallel strategy for STR marker development, capture, and genotyping.Nucleic Acids Res2017
29176730The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.Sci Rep2017
27077093Data characterizing the chloroplast genomes of extinct and endangered Hawaiian endemic mints (Lamiaceae) and their close relatives.Data Brief2016
27165938Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy.Mol Phylogenet Evol2016
27187213Giraffe genome sequence reveals clues to its unique morphology and physiology.Nat Commun2016
26912394Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity.Sci Rep2016
26953739The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae).Mol Phylogenet Evol2016
25523037Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.J Hum Evol2015
26159619Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools.BMC Genomics2015
26146078Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic.Cell Rep2015
25879703Identification of indels in next-generation sequencing data.BMC Bioinformatics2015
25471224Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history.Nat Commun2014
23530231Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar.Proc Natl Acad Sci U S A2013
24377391Galaxy tools to study genome diversity.Gigascience2013
23405114Comparison of sequencing platforms for single nucleotide variant calls in a human sample.PLoS One2013
22155688A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar.Genome Biol Evol2012
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Collaborators

Webb Miller
Co-authored papers 27
Ajay Chatrath
University of Virginia
Co-authored papers 6
Evan E Eichler
University of Washington
Co-authored papers 5
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 5
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 5
Stephen S Rich
Co-authored papers 4
Thomas W Blackwell
Co-authored papers 4
Jian Ma
Co-authored papers 4
Bernard Suh
Center for Biomolecular Science and Engineering, University of California
Co-authored papers 4
Kent D Taylor
Co-authored papers 3
Donna M Muzny
Baylor College of Medicine
Co-authored papers 3
Russell P Tracy
Co-authored papers 3
Myriam Fornage
Co-authored papers 3
Fritz J Sedlazeck
Baylor College of Medicine
Co-authored papers 3
Joanne E Curran
Co-authored papers 3
John Blangero
Co-authored papers 3
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Baylor College of Medicine
Co-authored papers 3
Yii-Der Ida Chen
Co-authored papers 3
Ruth J F Loos
Co-authored papers 3
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Co-authored papers 3
Robert C Kaplan
Co-authored papers 3
Adrienne M Stilp
Co-authored papers 3
Stacey Gabriel
Broad Institute of MIT and Harvard
Co-authored papers 3
Deborah A Nickerson
University of Washington
Co-authored papers 3
Bryce M Paschal
University of Virginia School of Medicine
Co-authored papers 3
Wonji Kim
Co-authored papers 3
Stefan Bekiranov
University of Virginia
Co-authored papers 3
Ginger A Metcalf
Co-authored papers 3
Nathan Pankratz
University of Minnesota
Co-authored papers 3
Albert V Smith
University of Michigan School of Public Health ann arbor
Co-authored papers 3
Release 1.2