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Author Details

Robert J Chalkley
Department of Pharmaceutical Chemistry, University of California at San Francisco
1999
105
43
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36863607Chemical Genetic Identification of PKC Epsilon Substrates in Mouse Brain.Mol Cell Proteomics2023
37857833A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response.Nat Cell Biol2023
36642223Capture, Release, and Identification of Newly Synthesized Proteins for Improved Profiling of Functional Translatomes.Mol Cell Proteomics2023
36863607Chemical Genetic Identification of PKC Epsilon Substrates in Mouse Brain.Mol Cell Proteomics2023
36739885SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis.Plant Cell2023
37857833A Legionella toxin exhibits tRNA mimicry and glycosyl transferase activity to target the translation machinery and trigger a ribotoxic stress response.Nat Cell Biol2023
36642223Capture, Release, and Identification of Newly Synthesized Proteins for Improved Profiling of Functional Translatomes.Mol Cell Proteomics2023
36739885SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis.Plant Cell2023
34893784Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.Nat Methods2022
35592564Application of Parallel Reaction Monitoring in <sup>15</sup>N Labeled Samples for Quantification.Front Plant Sci2022
35191489TSAFinder: exhaustive tumor-specific antigen detection with RNAseq.Bioinformatics2022
34893784Author Correction: Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.Nat Methods2022
35089788Modulating environmental signals to reveal mechanisms and vulnerabilities of cancer persisters.Sci Adv2022
35242158<sup>15</sup>N Metabolic Labeling Quantification Workflow in Arabidopsis Using Protein Prospector.Front Plant Sci2022
35592564Application of Parallel Reaction Monitoring in <sup>15</sup>N Labeled Samples for Quantification.Front Plant Sci2022
35191489TSAFinder: exhaustive tumor-specific antigen detection with RNAseq.Bioinformatics2022
35242158<sup>15</sup>N Metabolic Labeling Quantification Workflow in Arabidopsis Using Protein Prospector.Front Plant Sci2022
35089788Modulating environmental signals to reveal mechanisms and vulnerabilities of cancer persisters.Sci Adv2022
32938750Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.Mol Cell Proteomics2021
32938750Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.Mol Cell Proteomics2021
34725484Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.Nat Methods2021
34725484Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis.Nat Methods2021
32284353Characterization of Prenylated C-terminal Peptides Using a Thiopropyl-based Capture Technique and LC-MS/MS.Mol Cell Proteomics2020
32065175The effectiveness of filtering glycopeptide peak list files for Y ions.Mol Omics2020
32284353Characterization of Prenylated C-terminal Peptides Using a Thiopropyl-based Capture Technique and LC-MS/MS.Mol Cell Proteomics2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
33426223Proteomic analysis of platelet-rich and platelet-poor plasma.Regen Ther2020
32065175The effectiveness of filtering glycopeptide peak list files for Y ions.Mol Omics2020
33426223Proteomic analysis of platelet-rich and platelet-poor plasma.Regen Ther2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
30602589Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis.Mol Cell Proteomics2019
30602589Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis.Mol Cell Proteomics2019
31081335Proteomics Standards Initiative Extended FASTA Format.J Proteome Res2019
31213125A two-step probing method to compare lysine accessibility across macromolecular complex conformations.RNA Biol2019
31213125A two-step probing method to compare lysine accessibility across macromolecular complex conformations.RNA Biol2019
31081335Proteomics Standards Initiative Extended FASTA Format.J Proteome Res2019
29487104Prp8 positioning of U5 snRNA is linked to 5' splice site recognition.RNA2018
30270626Expanding the Use of Spectral Libraries in Proteomics.J Proteome Res2018
29487104Prp8 positioning of U5 snRNA is linked to 5' splice site recognition.RNA2018
29467287Revealing nascent proteomics in signaling pathways and cell differentiation.Proc Natl Acad Sci U S A2018
30270626Expanding the Use of Spectral Libraries in Proteomics.J Proteome Res2018
29467287Revealing nascent proteomics in signaling pathways and cell differentiation.Proc Natl Acad Sci U S A2018
27722944Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.Anal Bioanal Chem2017
28416608Hyper-<i>O</i>-GlcNAcylation activates nuclear factor κ-light-chain-enhancer of activated B cells (NF-κB) signaling through interplay with phosphorylation and acetylation.J Biol Chem2017
28492231PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3.Nat Commun2017
28793260Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice.Cell Rep2017
28515314The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.Mol Cell Proteomics2017
28183812New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.Mol Cell Proteomics2017
28154133Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in <i>Arabidopsis</i>.Proc Natl Acad Sci U S A2017
27722944Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.Anal Bioanal Chem2017
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Collaborators

Department of Pharmaceutical Chemistry, University of California san francisco
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University of Colorado Anschutz Medical Campus
Co-authored papers 7
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Co-authored papers 6
Institute for Systems Biology
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Institute of Systems, University of Liverpool
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University of California
Co-authored papers 3
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University of New Hampshire
Co-authored papers 3
Co-authored papers 3
ETH Zurich
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
University of California San Francisco
Co-authored papers 2
University of Manitoba
Co-authored papers 2
Max Planck Institute for Developmental Biology
Co-authored papers 2
University of Hohenheim, Institute of Food Science and Biotechnology
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Institute for Biotechnology, Technical University Berlin
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University of California San Francisco
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Utrecht University
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