Skip to Main Content

Author Details

John A Leigh
University of Washingtongrid.34477.33
1983
79
43
PMIDPaper TitleJournal TitlePublished Year
35107346A Genetic Study of <i>Nif</i>-Associated Genes in a Hyperthermophilic Methanogen.Microbiol Spectr2022
27736793Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis.J Bacteriol2016
24662145Metabolic versatility in methanogens.Curr Opin Biotechnol2014
24844759Hydrogenase-independent uptake and metabolism of electrons by the archaeon Methanococcus maripaludis.ISME J2014
23335420Effects of H2 and formate on growth yield and regulation of methanogenesis in Methanococcus maripaludis.J Bacteriol2013
24039260VhuD facilitates electron flow from H2 or formate to heterodisulfide reductase in Methanococcus maripaludis.J Bacteriol2013
24089473A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen.Genome Res2013
23443005H2-independent growth of the hydrogenotrophic methanogen Methanococcus maripaludis.mBio2013
23551135Phenotypic evidence that the function of the [Fe]-hydrogenase Hmd in Methanococcus maripaludis requires seven hcg (hmd co-occurring genes) but not hmdII.FEMS Microbiol Lett2013
22872868Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis.Proc Natl Acad Sci U S A2012
22739494Functional responses of methanogenic archaea to syntrophic growth.ISME J2012
21265868Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales.FEMS Microbiol Rev2011
21750103Parallel evolution of transcriptome architecture during genome reorganization.Genome Res2011
21402212Growth of methanogens under defined hydrogen conditions.Methods Enzymol2011
21402209Genetic systems for hydrogenotrophic methanogens.Methods Enzymol2011
20025661Overlapping repressor binding sites regulate expression of the Methanococcus maripaludis glnK(1) operon.Mol Microbiol2010
21070950Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR.Structure2010
20534465Protein complexing in a methanogen suggests electron bifurcation and electron delivery from formate to heterodisulfide reductase.Proc Natl Acad Sci U S A2010
20581182Interdomain conjugal transfer of DNA from bacteria to archaea.Appl Environ Microbiol2010
19671178Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea.BMC Evol Biol2009
19627604Quantitative proteomics of nutrient limitation in the hydrogenotrophic methanogen Methanococcus maripaludis.BMC Microbiol2009
18203827Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate.J Bacteriol2008
18791018Formate-dependent H2 production by the mesophilic methanogen Methanococcus maripaludis.Appl Environ Microbiol2008
18487331Roles of coenzyme F420-reducing hydrogenases and hydrogen- and F420-dependent methylenetetrahydromethanopterin dehydrogenases in reduction of F420 and production of hydrogen during methanogenesis.J Bacteriol2008
17456186Diverse homologues of the archaeal repressor NrpR function similarly in nitrogen regulation.FEMS Microbiol Lett2007
17950693NifI inhibits nitrogenase by competing with Fe protein for binding to the MoFe protein.Biochem Biophys Res Commun2007
17639608Protein abundance ratios for global studies of prokaryotes.Proteomics2007
17720835Genetic screen for regulatory mutations in Methanococcus maripaludis and its use in identification of induction-deficient mutants of the euryarchaeal repressor NrpR.Appl Environ Microbiol2007
17353934Metabolic modeling of a mutualistic microbial community.Mol Syst Biol2007
17506680Nitrogen regulation in bacteria and archaea.Annu Rev Microbiol2007
17502615Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea.Proc Natl Acad Sci U S A2007
16452419Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis.J Bacteriol2006
17124542Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics.Analyst2006
16777963Regulation of nitrogenase by 2-oxoglutarate-reversible, direct binding of a PII-like nitrogen sensor protein to dinitrogenase.Proc Natl Acad Sci U S A2006
16489187Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR.Mol Cell Proteomics2006
15659675Markerless mutagenesis in Methanococcus maripaludis demonstrates roles for alanine dehydrogenase, alanine racemase, and alanine permease.J Bacteriol2005
159166032-Oxoglutarate and the PII homologues NifI1 and NifI2 regulate nitrogenase activity in cell extracts of Methanococcus maripaludis.Mol Microbiol2005
15590692Regulation of nif expression in Methanococcus maripaludis: roles of the euryarchaeal repressor NrpR, 2-oxoglutarate, and two operators.J Biol Chem2005
15336407Continuous culture of Methanococcus maripaludis under defined nutrient conditions.FEMS Microbiol Lett2004
15466049Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.J Bacteriol2004
12492867A novel repressor of nif and glnA expression in the methanogenic archaeon Methanococcus maripaludis.Mol Microbiol2003
12670979Function and regulation of the formate dehydrogenase genes of the methanogenic archaeon Methanococcus maripaludis.J Bacteriol2003
11932238The genome of M. acetivorans reveals extensive metabolic and physiological diversity.Genome Res2002
12218015Regulatory response of Methanococcus maripaludis to alanine, an intermediate nitrogen source.J Bacteriol2002
11208785Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, NifI(1) and NifI(2).J Bacteriol2001
11471757Nitrogen fixation in methanogens: the archaeal perspective.Curr Issues Mol Biol2000
9864338Function and regulation of glnA in the methanogenic archaeon Methanococcus maripaludis.J Bacteriol1999
10322164Transcriptional regulation in Archaea.Curr Opin Microbiol1999
10220900Functional conservation between the argininosuccinate lyase of the archaeon Methanococcus maripaludis and the corresponding bacterial and eukaryal genes.FEMS Microbiol Lett1999
10430565Genetics of nitrogen regulation in Methanococcus maripaludis.Genetics1999
  • 1 - 50 of 79

Recommended Authors

Irina A Rodionova
University of California at San Diego
Career Start Year 2008
Number of shared co-authors 5
Ian K Blaby
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Career Start Year 2006
Number of shared co-authors 1
Michael P Thorgersen
University of Georgia
Career Start Year 2006
Number of shared co-authors 6
Dawn M Klingeman
Oak Ridge National Laboratory
Career Start Year 2005
Number of shared co-authors 7
Katherine Huang
Broad Institute of MIT and Harvard
Career Start Year 2004
Number of shared co-authors 12
Morgan N Price
Lawrence Berkeley National Laboratory
Career Start Year 2004
Number of shared co-authors 11
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Career Start Year 2002
Number of shared co-authors 9
Swapnil R Chhabra
Lawrence Berkeley National Laboratory
Career Start Year 2001
Number of shared co-authors 8
Farris L Poole
University of Georgia
Career Start Year 2000
Number of shared co-authors 7
Jeffrey A Gralnick
University of Minnesota - Twin Cities St. Paul 55108 USA.
Career Start Year 2000
Number of shared co-authors 1
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Career Start Year 2000
Number of shared co-authors 6
Christopher L Hemme
University of Rhode Island
Career Start Year 1998
Number of shared co-authors 12
Robert J Dodson
Northwestern University Biomedical Informatics Center and Center for Genetic Medicine
Career Start Year 1997
Number of shared co-authors 2
Konstantinos Mavromatis
Celgene Corporation
Career Start Year 1997
Number of shared co-authors 3
Jonathan H Badger
Center for Cancer Research, National Cancer Institute, National Institutes of Health
Career Start Year 1997
Number of shared co-authors 3
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Career Start Year 1997
Number of shared co-authors 14
Zamin K Yang
Oak Ridge National Laboratory
Career Start Year 1996
Number of shared co-authors 12
Dwayne A Elias
Oak Ridge National Laboratory
Career Start Year 1996
Number of shared co-authors 11
Nigel J Mouncey
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Career Start Year 1995
Number of shared co-authors 2
Jeremy D Selengut
Craig Venter Institute, 9704 Medical Center Drive
Career Start Year 1994
Number of shared co-authors 2
William C Nelson
Pacific Northwest National Laboratory
Career Start Year 1993
Number of shared co-authors 6
Yaoping Zhang
DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison
Career Start Year 1992
Number of shared co-authors 1
Hirotada Mori
Nara Institute of Science and Technology
Career Start Year 1984
Number of shared co-authors 0
Andrei L Osterman
Sanford Burnham Prebys Medical Discovery Institute
Career Start Year 1980
Number of shared co-authors 3
Gary J Olsen
University of Illinois
Career Start Year 1980
Number of shared co-authors 6
Deborah A Siegele
Texas A&M University, College Station
Career Start Year 1979
Number of shared co-authors 0
Barry L Wanner
Harvard Medical School
Career Start Year 1977
Number of shared co-authors 1
Timothy J Donohue
University of Wisconsin
Career Start Year 1976
Number of shared co-authors 2
Judy D Wall
University of Missouri
Career Start Year 1974
Number of shared co-authors 17
Antoine Danchin
University of Hong Kong
Career Start Year 1969
Number of shared co-authors 4

Collaborators

Erik L Hendrickson
University of Washington
Co-authored papers 12
Andrew Haydock
Co-authored papers 5
Nitin S Baliga
Institute for Systems Biology
Co-authored papers 3
David A Stahl
University of Washington
Co-authored papers 2
Sergey Stolyar
University of Idaho
Co-authored papers 2
Robert L Moritz
Institute for Systems Biology
Co-authored papers 2
Jay D Keasling
University of California berkeley
Co-authored papers 1
Ian T Paulsen
Macquarie University
Co-authored papers 1
Stephen K Burley
The State University of New Jersey
Co-authored papers 1
James Christopher Bare
Institute for Systems Biology
Co-authored papers 1
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 1
Andrew Zimmer
Co-authored papers 1
Sinem A Ozyurt
University of Central Florida
Co-authored papers 1
Alyssa M Redding
Lawrence Berkeley National Laboratory, Joint BioEnergy Institute
Co-authored papers 1
Nathan D Price
Institute for Systems Biology
Co-authored papers 1
Chad Nusbaum
Co-authored papers 1
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 1
Kristina L Hillesland
University of Washington Bothell
Co-authored papers 1
Edward E K Baidoo
Joint BioEnergy Institute
Co-authored papers 1
Jeffrey B Bonanno
Albert Einstein College of Medicine
Co-authored papers 1
Michael W W Adams
University of Georgia
Co-authored papers 1
Maynard V Olson
University of Washington
Co-authored papers 1
J Michael Sauder
Eli Lilly and Co.
Co-authored papers 1
Aindrila Mukhopadhyay
Joint BioEnergy Institute
Co-authored papers 1
Dan Tenenbaum
Fred Hutchinson Cancer Research Center
Co-authored papers 1
Owen White
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 1
Eric S Lander
Vanderbilt-Ingram Cancer Center, Vanderbilt University
Co-authored papers 1
Christopher B Walker
University of Washington
Co-authored papers 1
Bruce W Birren
Broad Institute of MIT and Harvard
Co-authored papers 1
Zhili He
Environmental Microbiomics Research Center, Sun Yat-Sen University
Co-authored papers 1
Release 1.2