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Author Details

Rui Wang
European Bioinformatics Institute (EMBL-EBI)
2011
20
17
PMIDPaper TitleJournal TitlePublished Year
27493588Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.Nat Methods2016
26545397PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.Mol Cell Proteomics2016
265277222016 update of the PRIDE database and its related tools.Nucleic Acids Res2016
276832222016 update of the PRIDE database and its related tools.Nucleic Acids Res2016
27415786Ten Simple Rules for Taking Advantage of Git and GitHub.PLoS Comput Biol2016
25158685Making proteomics data accessible and reusable: current state of proteomics databases and repositories.Proteomics2015
25910694ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.Bioinformatics2015
25475079Open source libraries and frameworks for biological data visualisation: a guide for developers.Proteomics2015
25542566A public repository for mass spectrometry imaging data.Anal Bioanal Chem2015
23467006Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.Biochim Biophys Acta2014
24659499jmzTab: a java interface to the mzTab data standard.Proteomics2014
24727771ProteomeXchange provides globally coordinated proteomics data submission and dissemination.Nat Biotechnol2014
23203882The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.Nucleic Acids Res2013
23448308HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.Anal Chem2013
23533138From Peptidome to PRIDE: public proteomics data migration at a large scale.Proteomics2013
22326964Isoelectric point optimization using peptide descriptors and support vector machines.J Proteomics2012
22949509The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.Mol Cell Proteomics2012
22434838PRIDE: quality control in a proteomics data repository.Database (Oxford)2012
22318026PRIDE Inspector: a tool to visualize and validate MS proteomics data.Nat Biotechnol2012
21538885A posteriori quality control for the curation and reuse of public proteomics data.Proteomics2011
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Collaborators

EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 19
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 17
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 14
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
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Co-authored papers 5
Co-authored papers 4
de Duve Institute, Universite catholique de Louvain
Co-authored papers 3
Ruhr University Bochum
Co-authored papers 3
Co-authored papers 2
National Center for Biotechnology
Co-authored papers 2
Institute of Systems, University of Liverpool
Co-authored papers 2
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Utrecht University
Co-authored papers 1
Institute of Chemistry, Federal University of Rio de Janeiro
Co-authored papers 1
Max Planck Institute for Developmental Biology
Co-authored papers 1
Institute of Pharmacy and Molecular Biotechnology, Heidelberg University
Co-authored papers 1
Massachusetts Institute of Technology, Scientific Data - Nature, Software Sustainability Institute, University College London, University of Law - London Bloomsbury Centre
Co-authored papers 1
University of California
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University of Michigan ann arbor
Co-authored papers 1
University of Kentucky
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University of St Andrews
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Institute for Bioinformatics and Medical Informatics, University of Tubingen
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University of Cambridge
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Department of Pharmaceutical Chemistry, University of California at San Francisco
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University of Lausanne
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National Center for Supercomputing Applications, University of Illinois
Co-authored papers 1