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Author Details

Yulia A Medvedeva
Research Center of Biotechnology RAS, Russian Academy of Sciences
1975
52
21
PMIDPaper TitleJournal TitlePublished Year
37971293HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.Nucleic Acids Res2024
36350659EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes.Nucleic Acids Res2023
37047200Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq.Int J Mol Sci2023
37239934Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms.Int J Mol Sci2023
36674506In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data.Int J Mol Sci2023
35202091HiMoRNA: A Comprehensive Database of Human lncRNAs Involved in Genome-Wide Epigenetic Regulation.Noncoding RNA2022
36232714RUNX1/CEBPA Mutation in Acute Myeloid Leukemia Promotes Hypermethylation and Indicates for Demethylation Therapy.Int J Mol Sci2022
34011993Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2021
34404761A Catalogus Immune Muris of the mouse immune responses to diverse pathogens.Cell Death Dis2021
34458728Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells.NAR Genom Bioinform2021
34425241Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes.Biochim Biophys Acta Gene Regul Mech2021
33321875Direct Interactions with Nascent Transcripts Is Potentially a Common Targeting Mechanism of Long Non-Coding RNAs.Genes (Basel)2020
32012884Practical Guidance in Genome-Wide RNA:DNA Triple Helix Prediction.Int J Mol Sci2020
32094342RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.Nat Commun2020
29697742Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools.Brief Bioinform2019
30709331CpG traffic lights are markers of regulatory regions in human genome.BMC Genomics2019
30941122Differential Targeting of c-Maf, Bach-1, and Elmo-1 by microRNA-143 and microRNA-365 Promotes the Intracellular Growth of Mycobacterium tuberculosis in Alternatively IL-4/IL-13 Activated Macrophages.Front Immunol2019
29140464HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.Nucleic Acids Res2018
29617876A novel method for improved accuracy of transcription factor binding site prediction.Nucleic Acids Res2018
29550351Peripubertal serum dioxin concentrations and subsequent sperm methylome profiles of young Russian adults.Reprod Toxicol2018
29605853Experimental Design and Bioinformatic Analysis of DNA Methylation Data.Methods Mol Biol2018
29375012ASSA: Fast identification of statistically significant interactions between long RNAs.J Bioinform Comput Biol2018
29107676Perinatal exposure to low dose 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) alters sperm DNA methylation in adult rats.Reprod Toxicol2018
27794045Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.Nucleic Acids Res2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
28829439An integrated expression atlas of miRNAs and their promoters in human and mouse.Nat Biotechnol2017
28873953Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions.Mol Biol Evol2017
27005429Preservation of methylated CpG dinucleotides in human CpG islands.Biol Direct2016
26586801HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.Nucleic Acids Res2016
26153137EpiFactors: a comprehensive database of human epigenetic factors and complexes.Database (Oxford)2015
26073445Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera.Sci Rep2015
24669864Effects of cytosine methylation on transcription factor binding sites.BMC Genomics2014
25275320Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.PLoS One2014
24534716Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation.Mol Immunol2014
24670764A promoter-level mammalian expression atlas.Nature2014
22803819Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.J Biomol Struct Dyn2013
23428183Regional differences in gene expression and promoter usage in aged human brains.Neurobiol Aging2013
23175603HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.Nucleic Acids Res2013
22670148Mutations and binding sites of human transcription factors.Front Genet2012
22693437Exploring massive, genome scale datasets with the GenometriCorr package.PLoS Comput Biol2012
21852305A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.Bioinformatics2011
22279749[Using the operonic gene pairs for establishing the treshold for correlation coefficient of differently expressed genes].Biofizika2011
20085634Intergenic, gene terminal, and intragenic CpG islands in the human genome.BMC Genomics2010
21268339[Asymmetry of the GC content in vicinity of transcription starts (with participation of polymerase PoII) and its correlation with location of adsorption sites of protein SP1 on DNA].Biofizika2010
11482194[Prospects for differentiated conservative treatment of patients with benign prostatic hyperplasia].Klin Khir2001
10204169[Effect of albumin on the Na, K-ATPase activity in the rat erythrocytes during immobilization stress].Ross Fiziol Zh Im I M Sechenova1998
8162117[The dynamics and mechanism of changes in the erythrocyte Na, K-ATPase activity of rats under the action of different types of stressors].Fiziol Zh Im I M Sechenova1993
8167664[Erythrocyte Na, K-ATPase activity during immobilization stress in rats differing in motor activity].Fiziol Zh Im I M Sechenova1993
1338875[The effect of hypothermic stress on Na,K-ATPase activity in rat erythrocytes].Fiziol Zh SSSR Im I M Sechenova1992
309604[Subpopulations of the peripheral blood lymphocytes in lymphocytic leukemia and lymphosarcoma].Probl Gematol Pereliv Krovi1978
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Collaborators

Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 13
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Co-authored papers 11
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 10
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Co-authored papers 7
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Co-authored papers 7
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Co-authored papers 5
RIKEN Center for Integrative Medical Sciences (IMS)
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Karolinska Institute
Co-authored papers 5
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Co-authored papers 5
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 4
NTNU - Norwegian University of Science and Technology
Co-authored papers 4
Center for Integrative Medical Sciences
Co-authored papers 4
Institute for Information Transmission Problems of the Russian Academy of Sciences
Co-authored papers 4
College of Science and Engineering, Hamad Bin Khalifa University
Co-authored papers 4
Center for Integrative Medical Sciences
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Telethon Kids Institute, University of Western Australia
Co-authored papers 4
Cerevance Ltd
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RIKEN Center for Integrative Medical Sciences
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Johns Hopkins School of Medicine
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RIKEN Center for Integrative Medical Sciences
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University Bordeaux, CNRS
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