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Author Details

Nils Gehlenborg
Harvard Medical School
2006
71
21
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36155452Polyphony: an Interactive Transfer Learning Framework for Single-Cell Data Analysis.IEEE Trans Vis Comput Graph2023
38074525DRAVA: Aligning Human Concepts with Machine Learning Latent Dimensions for the Visual Exploration of Small Multiples.Proc SIGCHI Conf Hum Factor Comput Syst2023
37603400Alerts and Collections for Automating Patients' Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study.JMIR Hum Factors2023
36945543Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.bioRxiv2023
37010887New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study.JMIR Form Res2023
37468756Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).Nat Cell Biol2023
37468619Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging.Nat Methods2023
37468387How surgeons use risk calculators and non-clinical factors for informed consent and shared decision making: A qualitative study.Am J Surg2023
37333123The chromatin landscape of healthy and injured cell types in the human kidney.bioRxiv2023
36688709Gos: a declarative library for interactive genomics visualization in Python.Bioinformatics2023
36688700Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.Bioinformatics2023
36166553Multi-View Design Patterns and Responsive Visualization for Genomics Data.IEEE Trans Vis Comput Graph2023
36223348Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing.IEEE Trans Vis Comput Graph2023
36191105GenoREC: A Recommendation System for Interactive Genomics Data Visualization.IEEE Trans Vis Comput Graph2023
34596551Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization.IEEE Trans Vis Comput Graph2022
35738646Changes in laboratory value improvement and mortality rates over the course of the pandemic: an international retrospective cohort study of hospitalised patients infected with SARS-CoV-2.BMJ Open2022
35768548International electronic health record-derived post-acute sequelae profiles of COVID-19 patients.NPJ Digit Med2022
35545714Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web.Nat Methods2022
35501320The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.Nat Commun2022
35486432Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery.JMIR Hum Factors2022
36323678Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.Nat Commun2022
34587068ThreadStates: State-based Visual Analysis of Disease Progression.IEEE Trans Vis Comput Graph2022
33026994A Generic Framework and Library for Exploration of Small Multiples through Interactive Piling.IEEE Trans Vis Comput Graph2021
33691032Making Tools that People Will Use: User-Centered Design in Computational Biology Research.Pac Symp Biocomput2021
34889759Authorship Correction: International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study.J Med Internet Res2021
34252935OncoThreads: visualization of large-scale longitudinal cancer molecular data.Bioinformatics2021
34115127International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries.JAMA Netw Open2021
31442989Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets.IEEE Trans Vis Comput Graph2020
34334852Peax: Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning.Comput Graph Forum2020
33188371Guidelines for reporting single-cell RNA-seq experiments.Nat Biotechnol2020
29993603Lineage: Visualizing Multivariate Clinical Data in Genealogy Graphs.IEEE Trans Vis Comput Graph2019
31768085Tasks, Techniques, and Tools for Genomic Data Visualization.Comput Graph Forum2019
28866592HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.IEEE Trans Vis Comput Graph2018
30143029HiGlass: web-based visual exploration and analysis of genome interaction maps.Genome Biol2018
31396383Visual Pattern-Driven Exploration of Big Data.2018 Int Symp Big Data Vis Immers Analyt (BDVA) (2018)2018
29186292SATORI: a system for ontology-guided visual exploration of biomedical data repositories.Bioinformatics2018
28899361Interactive visual exploration and refinement of cluster assignments.BMC Bioinformatics2017
28645171UpSetR: an R package for the visualization of intersecting sets and their properties.Bioinformatics2017
27942091From Visual Exploration to Storytelling and Back Again.Comput Graph Forum2016
29973745AVOCADO: Visualization of Workflow-Derived Data Provenance for Reproducible Biomedical Research.Comput Graph Forum2016
28004011METHODS TO ENHANCE THE REPRODUCIBILITY OF PRECISION MEDICINE.Pac Symp Biocomput2016
25825831Response to "Plotting intersections" by Lentini.Nat Methods2015
26061751Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.N Engl J Med2015
24645191Bar charts and box plots.Nat Methods2014
26356916Domino: Extracting, Comparing, and Manipulating Subsets Across Multiple Tabular Datasets.IEEE Trans Vis Comput Graph2014
26356912UpSet: Visualization of Intersecting Sets.IEEE Trans Vis Comput Graph2014
25313082Characterization of HPV and host genome interactions in primary head and neck cancers.Proc Natl Acad Sci U S A2014
25166867Guided visual exploration of genomic stratifications in cancer.Nat Methods2014
25164756Comparative analysis of metazoan chromatin organization.Nature2014
24808195Ontologies in biological data visualization.IEEE Comput Graph Appl2014
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Collaborators

Nils Gehlenborg
Co-authored papers 71
Peter J Park
Harvard Medical School
Co-authored papers 11
Alexander Lex
Co-authored papers 10
Hanspeter Pfister
Co-authored papers 10
Sehi L'Yi
Co-authored papers 9
Fritz Lekschas
Co-authored papers 8
Bang Wong
Co-authored papers 7
Marc Streit
Co-authored papers 7
Qianwen Wang
Co-authored papers 7
Gabriel A Brat
Beth Israel Deaconess Medical Center (BIDMC), Harvard Medical School
Co-authored papers 5
Peter Kerpedjiev
Co-authored papers 5
Isaac S Kohane
Harvard Medical School
Co-authored papers 5
Chuan Hong
Harvard Medical School, USA Duke University
Co-authored papers 4
Griffin M Weber
Harvard Medical School
Co-authored papers 4
Gilbert S Omenn
and School of Public Health, University of Michigan ann arbor
Co-authored papers 4
Bertrand Moal
Co-authored papers 4
Drashko Nakikj
Co-authored papers 4
Andrew M South
Wake Forest University School of Medicine
Co-authored papers 4
Samuel Gratzl
Co-authored papers 4
David A Hanauer
University of Michigan ann arbor
Co-authored papers 4
Burak H Alver
Co-authored papers 4
Shyam Visweswaran
University of Pittsburgh
Co-authored papers 4
Antoine Neuraz
INSERM UMR 3, Universite Paris Cite, Imagine Institute
Co-authored papers 4
Shawn N Murphy
Harvard Medical School
Co-authored papers 4
Alba Guti??rrez-Sacrist??n
Harvard Medical School
Co-authored papers 4
Kee Yuan Ngiam
Yong Loo Lin School of Medicine, National University of Singapore
Co-authored papers 4
Soohyun Lee
Co-authored papers 4
Paul Avillach
Harvard Medical School
Co-authored papers 4
Arianna Dagliati
University of Pavia
Co-authored papers 3
Daehee Hwang
Co-authored papers 3
Release 1.2