Author details

Full Name

Arzucan Ã¿zgÃ¼r

Affiliation

ORCID

Career Start Year

2008

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37064215	Editorial: Pattern recognition for healthcare analytics.	Front Digit Health	2023
33557857	A novel gene selection method for gene expression data for the task of cancer type classification.	Biology Direct	2021
32027969	Exploring chemical space using natural language processing methodologies for drug discovery.	Drug Discovery Today	2020
31195961	Statistical representation models for mutation information within genomic data.	BMC Bioinformatics	2019
31865904	Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels.	BMC Bioinformatics	2019
30917789	Linking entities through an ontology using word embeddings and syntactic re-ranking.	BMC Bioinformatics	2019
30689846	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.	Database (Oxford)	2019
29949957	A novel methodology on distributed representations of proteins using their interacting ligands.		2018
29880031	Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.	J Biomed Semantics	2018
30423097	DeepDTA: deep drug-target binding affinity prediction.		2018
28077568	Automatic query generation using word embeddings for retrieving passages describing experimental methods.	Database : the journal of biological databases and curation	2017
28881973	BIOSSES: a semantic sentence similarity estimation system for the biomedical domain.		2017
28288685	Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.	J Biomed Semantics	2017
28031747	The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature.	BioData Min	2016
26991442	Identifying Topics in Microblogs Using Wikipedia.	PLoS ONE	2016
26987649	A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction.	BMC Bioinformatics	2016
27708573	Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study.	Frontiers in Neuroinformatics	2016
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
26696993	Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network.	Front Microbiol	2015
25914674	A review on computational systems biology of pathogen-host interactions.	Frontiers in Microbiology	2015
25785184	Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.	J Biomed Semantics	2015
25689853	Classification of Beta-lactamases and penicillin binding proteins using ligand-centric network models.	PLoS ONE	2015
25971743	GLASS: a comprehensive database for experimentally validated GPCR-ligand associations.	Bioinformatics	2015
26201262	Detection and categorization of bacteria habitats using shallow linguistic analysis.	BMC Bioinformatics	2015
25036210	Bayesian pathway analysis of cancer microarray data.	PLoS ONE	2014
23515528	PHISTO: pathogen-host interaction search tool.		2013
23256563	Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining.	J Biomed Semantics	2012
22177292	U-Compare bio-event meta-service: compatible BioNLP event extraction services.	BMC Bioinformatics	2011
21624163	Mining of vaccine-associated IFN-Î³ gene interaction networks using the Vaccine Ontology.	J Biomed Semantics	2011
20625487	Literature-based discovery of IFN-gamma and vaccine-mediated gene interaction networks.	J Biomed Biotechnol	2010
18978014	Michigan molecular interactions r2: from interacting proteins to pathways.	Nucleic Acids Res	2009
18586725	Identifying gene-disease associations using centrality on a literature mined gene-interaction network.		2008
18834497	Introducing meta-services for biomedical information extraction.	Genome Biol	2008