Author details

Full Name

Thom Vreven

Affiliation

Visterra Inc.

ORCID

Career Start Year

2000

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37091871	Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development.	Front Mol Biosci	2023
37091871	Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development.	Front Mol Biosci	2023
33355667	High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.	Bioinformatics	2021
33539768	An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants.	Structure	2021
33355667	High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.	Bioinformatics	2021
33539768	An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants.	Structure	2021
31393558	Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.	Bioinformatics	2020
31994784	Performance of ZDOCK and IRAD in CAPRI rounds 39-45.	Proteins	2020
31393558	Integrating ab initio and template-based algorithms for protein-protein complex structure prediction.	Bioinformatics	2020
31994784	Performance of ZDOCK and IRAD in CAPRI rounds 39-45.	Proteins	2020
30548653	Computational investigation into the fluorescence of luciferin analogues.	J Comput Chem	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
30548653	Computational investigation into the fluorescence of luciferin analogues.	J Comput Chem	2019
31612567	Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.	Proteins	2019
29665372	Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.	J Mol Biol	2018
29665372	Integrating Cross-Linking Experiments with Ab Initio Protein-Protein Docking.	J Mol Biol	2018
27718275	Performance of ZDOCK and IRAD in CAPRI rounds 28-34.	Proteins	2017
28200016	IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.	Bioinformatics	2017
27718275	Performance of ZDOCK and IRAD in CAPRI rounds 28-34.	Proteins	2017
28200016	IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.	Bioinformatics	2017
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26231283	Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.	J Mol Biol	2015
26231283	Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.	J Mol Biol	2015
23836482	Binding interface prediction by combining protein-protein docking results.	Proteins	2014
25260513	Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.	BMC Bioinformatics	2014
23818491	Evaluating template-based and template-free protein-protein complex structure prediction.	Brief Bioinform	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
23836482	Binding interface prediction by combining protein-protein docking results.	Proteins	2014
24532726	ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.	Bioinformatics	2014
24906152	The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing.	Cell	2014
25260513	Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes.	BMC Bioinformatics	2014
24906152	The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing.	Cell	2014
24532726	ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.	Bioinformatics	2014
24155158	Blind prediction of interfacial water positions in CAPRI.	Proteins	2014
23818491	Evaluating template-based and template-free protein-protein complex structure prediction.	Brief Bioinform	2014
23437194	Exploring angular distance in protein-protein docking algorithms.	PLoS One	2013
24123140	Performance of ZDOCK in CAPRI rounds 20-26.	Proteins	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
23437194	Exploring angular distance in protein-protein docking algorithms.	PLoS One	2013
24123140	Performance of ZDOCK in CAPRI rounds 20-26.	Proteins	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
22238219	Prediction of protein-protein binding free energies.	Protein Sci	2012
26593184	Deconstructing the ONIOM Hessian: Investigating Method Combinations for Transition Structures.	J Chem Theory Comput	2012
23141543	UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery.	Cell	2012
22238219	Prediction of protein-protein binding free energies.	Protein Sci	2012
26593184	Deconstructing the ONIOM Hessian: Investigating Method Combinations for Transition Structures.	J Chem Theory Comput	2012
23141543	UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery.	Cell	2012
21739500	Integrating atom-based and residue-based scoring functions for protein-protein docking.	Protein Sci	2011
26606231	Oscillator Strengths in ONIOM Excited State Calculations.	J Chem Theory Comput	2011

1 - 50 of 98

Michael J Robertson

Stanford University School of Medicine

Career Start Year 2015

Number of shared co-authors 2

Doo Nam Kim

Pacific Northwest National Laboratory

Career Start Year 2008

Number of shared co-authors 0

Raquel Dias

University of Florida

Career Start Year 2008

Number of shared co-authors 0

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 5

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Jacob D Durrant

University of Pittsburgh

Career Start Year 2006

Number of shared co-authors 0

Jianwei Che

Dana-Farber Cancer Institute

Career Start Year 2005

Number of shared co-authors 0

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 4

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 7

Manuel Rueda

The Barcelona Institute of Science and Technology

Career Start Year 2001

Number of shared co-authors 2

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Career Start Year 2001

Number of shared co-authors 3

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 6

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 23

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 9

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 6

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 1

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 5

Paul D Adams

Lawrence Berkeley National Laboratory

Career Start Year 1994

Number of shared co-authors 10

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 2

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 1

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 2

Brian K Shoichet

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1989

Number of shared co-authors 5

Gerhard Klebe

Institut fur Pharmazeutische Chemie, Philipps-Universitat Marburg

Career Start Year 1988

Number of shared co-authors 3

Herman W T van Vlijmen

Leiden Academic Centre for Drug Research (LACDR), Leiden University

Career Start Year 1988

Number of shared co-authors 1

Piotr Cieplak

Sanford-Burnham-Prebys Medical Discovery Institute

Career Start Year 1987

Number of shared co-authors 0

Michael K Gilson

University of California

Career Start Year 1985

Number of shared co-authors 2

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 2

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 14

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 10

row(s) 1 - 30 of 30

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 26

Brian G Pierce

University of Maryland Institute for Bioscience and Biotechnology Research

Co-authored papers 15

Howook Hwang

Co-authored papers 13

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 8

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 7

Paul A Bates

The Francis Crick Institute

Co-authored papers 7

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 6

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 6

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Co-authored papers 5

Jeffrey J Gray

Johns Hopkins University

Co-authored papers 5

Chaok Seok

Seoul National University

Co-authored papers 5

Sheng-You Huang

Huazhong University of Science and Technology

Co-authored papers 5

Xiaoqin Zou

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 5

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 5

Tyler Borrman

University of Massachusetts Medical School

Co-authored papers 5

Daisuke Kihara

Purdue University

Co-authored papers 4

Sergei Grudinin

University Grenoble Alpes, CNRS

Co-authored papers 4

Mieczyslaw Torchala

University of Gdansk

Co-authored papers 4

Dima Kozakov

Stony Brook University

Co-authored papers 4

Sandor Vajda

Boston University

Co-authored papers 4

Sanbo Qin

University of Illinois at Chicago

Co-authored papers 4

Hasup Lee

Seoul National University

Co-authored papers 4

Huan-Xiang Zhou

University of Illinois Chicago

Co-authored papers 4

Petras J Kundrotas

The University of Kansas

Co-authored papers 3

Eiji Kanamori

Co-authored papers 3

Ilya A Vakser

The University of Kansas

Co-authored papers 3

Sweta Vangaveti

Co-authored papers 3

Krishna Praneeth Kilambi

Co-authored papers 3

Julie C Mitchell

Co-authored papers 3

Dmitri Beglov

Boston University

Co-authored papers 3

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators