Author details

Full Name

Aubrey Bailey

Affiliation

Perelman School of Medicine, University of Pennsylvania

ORCID

Career Start Year

2013

Papers

H Index

Expertise

CM4AI Collaborator

Nevan J Krogan (CM4AI)

PMID	Paper Title	Journal Title	Published Year
30665461	Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana.	Genome Biol	2019
31415219	Upper Respiratory Dysbiosis with a Facultative-dominated Ecotype in Advanced Lung Disease and Dynamic Change after Lung Transplant.	Ann Am Thorac Soc	2019
29666764	Evaluation of a therapy for Idiopathic Chronic Enterocolitis in rhesus macaques (<i>Macaca mulatta</i>) and linked microbial community correlates.	PeerJ	2018
29588401	Allometry and Ecology of the Bilaterian Gut Microbiome.	mBio	2018
28799909	Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease.	Cell Host Microbe	2017
28492938	Association Between Breast Milk Bacterial Communities and Establishment and Development of the Infant Gut Microbiome.	JAMA Pediatr	2017
28121709	Associations of the vaginal microbiota with HIV infection, bacterial vaginosis, and demographic factors.	AIDS	2017
28179566	Human and rat gut microbiome composition is maintained following sleep restriction.	Proc Natl Acad Sci U S A	2017
29141885	A role for bacterial urease in gut dysbiosis and Crohn's disease.	Sci Transl Med	2017
29215023	A Pilot Characterization of the Human Chronobiome.	Sci Rep	2017
26989200	Peptidoglycan from the gut microbiota governs the lifespan of circulating phagocytes at homeostasis.	Blood	2016
28344990	INSPIIRED: A Pipeline for Quantitative Analysis of Sites of New DNA Integration in Cellular Genomes.	Mol Ther Methods Clin Dev	2016
28344988	INSPIIRED: Quantification and Visualization Tools for Analyzing Integration Site Distributions.	Mol Ther Methods Clin Dev	2016
27176607	Dietary Regulation of the Gut Microbiota Engineered by a Minimal Defined Bacterial Consortium.	PLoS One	2016
27338728	Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota.	Microbiome	2016
25403800	Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients.	Am J Transplant	2015
26468751	Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn's Disease.	Cell Host Microbe	2015
24505246	Characterization of resistance gene analogues (RGAs) in apple (Malus Ã¿ domestica Borkh.) and their evolutionary history of the Rosaceae family.	PLoS One	2014
25082704	Coinfection. Virus-helminth coinfection reveals a microbiota-independent mechanism of immunomodulation.	Science	2014
23348058	Quantitation of HIV DNA integration: effects of differential integration site distributions on Alu-PCR assays.	J Virol Methods	2013
23719353	Bringing it all together: big data and HIV research.	AIDS	2013

1 - 21 of 21

Cameron Martino

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2018

Number of shared co-authors 0

Stephen Wandro

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2017

Number of shared co-authors 0

Clarisse Marotz

University of California San Diego

Career Start Year 2015

Number of shared co-authors 1

Allyson L Byrd

Genentech Inc.

Career Start Year 2014

Number of shared co-authors 0

Justine W Debelius

Karolinska Institutet

Career Start Year 2014

Number of shared co-authors 0

Gregory Humphrey

University of California

Career Start Year 2013

Number of shared co-authors 2

Yoshiki V??zquez-Baeza

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2013

Number of shared co-authors 2

Gail Ackermann

University of California San Diego

Career Start Year 2013

Number of shared co-authors 0

Pajau Vangay

University of Minnesota

Career Start Year 2013

Number of shared co-authors 1

Paul I Costea

Weizmann Institute of Science

Career Start Year 2012

Number of shared co-authors 1

Antonio Gonzalez

University of California San Diego School of Medicine

Career Start Year 2011

Number of shared co-authors 3

Ivan Vujkovic-Cvijin

Cedars-Sinai Medical Center, USA F. Widjaja Inflammatory Bowel Disease Institute

Career Start Year 2010

Number of shared co-authors 0

Dan Knights

University of Minnesota

Career Start Year 2010

Number of shared co-authors 7

Jordan E Bisanz

University of California san francisco

Career Start Year 2010

Number of shared co-authors 5

Austin D Swafford

Center for Microbiome Innovation, University of California San Diego

Career Start Year 2008

Number of shared co-authors 1

Nicola Segata

University of Trento

Career Start Year 2008

Number of shared co-authors 6

Daniel McDonald

University of California San Diego

Career Start Year 2007

Number of shared co-authors 3

Curtis Huttenhower

Broad Institute of MIT and Harvard

Career Start Year 2006

Number of shared co-authors 6

Peter J Turnbaugh

University of California san francisco

Career Start Year 2005

Number of shared co-authors 6

Douglas W Fadrosh

University of California san francisco

Career Start Year 2005

Number of shared co-authors 0

Manimozhiyan Arumugam

Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen

Career Start Year 2004

Number of shared co-authors 3

Susan V Lynch

University of California san francisco

Career Start Year 2004

Number of shared co-authors 3

Morgan G I Langille

Dalhousie University

Career Start Year 2004

Number of shared co-authors 3

Ami S Bhatt

Stanford University

Career Start Year 2003

Number of shared co-authors 3

Patrick D Schloss

University of Michigan ann arbor

Career Start Year 2003

Number of shared co-authors 3

Omry Koren

Bar-Ilan University

Career Start Year 2003

Number of shared co-authors 4

Jeroen Raes

KU Leuven - University of Leuven

Career Start Year 2002

Number of shared co-authors 4

Rob Knight

University of California

Career Start Year 1998

Number of shared co-authors 7

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Career Start Year 1998

Number of shared co-authors 3

Anthony A Fodor

University of North Carolina at Charlotte

Career Start Year 1997

Number of shared co-authors 2

row(s) 1 - 30 of 30

Frederic D Bushman

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 20

Kyle Bittinger

Children's Hospital of Philadelphia

Co-authored papers 13

Christian Hoffmann

Food Research Center (FoRC)

Co-authored papers 4

Ronald G Collman

University of Pennsylvania School of Medicine

Co-authored papers 4

Nirav Malani

University of Pennsylvania Perelman School of Medicine

Co-authored papers 4

Charlene Compher

University of Pennsylvania

Co-authored papers 2

Jason D Christie

University of Pennsylvania Perelman School of Medicine

Co-authored papers 2

Rudolf P Bohm

Co-authored papers 2

Spencer Barton

Co-authored papers 1

Kasi E Russell-Lodrigue

Co-authored papers 1

Sourav Bandyopadhyay

University of California San Francisco

Co-authored papers 1

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 1

Stephen J Chanock

National Cancer Institute, National Institutes of Health

Co-authored papers 1

Clary B Clish

Broad Institute of MIT and Harvard

Co-authored papers 1

Adrienne Rollie

Children's Hospital Los Angeles

Co-authored papers 1

Seth D Rhoades

University of Pennsylvania

Co-authored papers 1

Thomas S Price

at the University of Pennsylvania Perelman School of Medicine

Co-authored papers 1

Ramnik J Xavier

Broad Institute of MIT and Harvard

Co-authored papers 1

Lihong Chen

Advanced Institute for Medical Sciences, Dalian Medical University

Co-authored papers 1

Randal S Olson

University of Pennsylvania

Co-authored papers 1

Amy Campbell

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Garret A FitzGerald

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Casey S Greene

Co-authored papers 1

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 1

Paolo Fontana

San Pio Hospital

Co-authored papers 1

Shoshannah L Roth

Cornell University

Co-authored papers 1

John A T Young

Roche Pharma

Co-authored papers 1

Judith E Allen

Lydia Becker Institute for Immunology & Infection, University of Manchester