Author details

Full Name

Wing Hung Wong

Affiliation

Stanford University

ORCID

Career Start Year

1991

Papers

206

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37502861	EpiGePT: a Pretrained Transformer model for epigenomics.	bioRxiv	2024
37502861	EpiGePT: a Pretrained Transformer model for epigenomics.	bioRxiv	2024
36215037	HiChIPdb: a comprehensive database of HiChIP regulatory interactions.	Nucleic Acids Res	2023
35503836	Revealing Free Energy Landscape From MD Data via Conditional Angle Partition Tree.	IEEE/ACM Trans Comput Biol Bioinform	2023
36215037	HiChIPdb: a comprehensive database of HiChIP regulatory interactions.	Nucleic Acids Res	2023
37584462	Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment.	Hum Mol Genet	2023
37399400	Comprehensive tissue deconvolution of cell-free DNA by deep learning for disease diagnosis and monitoring.	Proc Natl Acad Sci U S A	2023
37023129	NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks.	Proc Natl Acad Sci U S A	2023
36494035	CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network.	Genomics Proteomics Bioinformatics	2023
37258665	Deterministic evolution and stringent selection during preneoplasia.	Nature	2023
37053313	The origins and functional effects of postzygotic mutations throughout the human life span.	Science	2023
37292801	scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data.	bioRxiv	2023
37584462	Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment.	Hum Mol Genet	2023
35503836	Revealing Free Energy Landscape From MD Data via Conditional Angle Partition Tree.	IEEE/ACM Trans Comput Biol Bioinform	2023
37292801	scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data.	bioRxiv	2023
37258665	Deterministic evolution and stringent selection during preneoplasia.	Nature	2023
37023129	NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks.	Proc Natl Acad Sci U S A	2023
37053313	The origins and functional effects of postzygotic mutations throughout the human life span.	Science	2023
37399400	Comprehensive tissue deconvolution of cell-free DNA by deep learning for disease diagnosis and monitoring.	Proc Natl Acad Sci U S A	2023
36494035	CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network.	Genomics Proteomics Bioinformatics	2023
34304711	Loss of KMT2C reprograms the epigenomic landscape in hPSCs resulting in NODAL overexpression and a failure of hemogenic endothelium specification.	Epigenetics	2022
36175411	Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.	Nat Commun	2022
35901781	"Fateful" encounter: Lineage tracing meets phylogeny to unravel mysteries of cancer progression.	Dev Cell	2022
36229829	Author Correction: Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG.	Genome Biol	2022
35578363	Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG.	Genome Biol	2022
35951677	Nested epistasis enhancer networks for robust genome regulation.	Science	2022
35992073	Unfolding the genotype-to-phenotype black box of cardiovascular diseases through cross-scale modeling.	iScience	2022
36525361	Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification.	Elife	2022
34304711	Loss of KMT2C reprograms the epigenomic landscape in hPSCs resulting in NODAL overexpression and a failure of hemogenic endothelium specification.	Epigenetics	2022
35293310	DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility.	Genomics Proteomics Bioinformatics	2022
34978563	On the identifiability of the isoform deconvolution problem: application to select the proper fragment length in an RNA-seq library.	Bioinformatics	2022
35058621	scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning.	Nat Biotechnol	2022
34930827	Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm.	Proc Natl Acad Sci U S A	2022
35578363	Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG.	Genome Biol	2022
36525361	Heritability enrichment in context-specific regulatory networks improves phenotype-relevant tissue identification.	Elife	2022
36175411	Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.	Nat Commun	2022
35901781	"Fateful" encounter: Lineage tracing meets phylogeny to unravel mysteries of cancer progression.	Dev Cell	2022
35992073	Unfolding the genotype-to-phenotype black box of cardiovascular diseases through cross-scale modeling.	iScience	2022
36229829	Author Correction: Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG.	Genome Biol	2022
35951677	Nested epistasis enhancer networks for robust genome regulation.	Science	2022
34978563	On the identifiability of the isoform deconvolution problem: application to select the proper fragment length in an RNA-seq library.	Bioinformatics	2022
35058621	scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning.	Nat Biotechnol	2022
34930827	Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm.	Proc Natl Acad Sci U S A	2022
35293310	DeepCAGE: Incorporating Transcription Factors in Genome-wide Prediction of Chromatin Accessibility.	Genomics Proteomics Bioinformatics	2022
32919612	Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons.	Biol Psychiatry	2021
34180954	MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting.	Brief Bioinform	2021
34179690	Simultaneous deep generative modeling and clustering of single cell genomic data.	Nat Mach Intell	2021
34234141	Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis.	Nat Commun	2021
34285077	Dynamic chromatin regulatory landscape of human CAR T cell exhaustion.	Proc Natl Acad Sci U S A	2021
33990562	Modeling regulatory network topology improves genome-wide analyses of complex human traits.	Nat Commun	2021

1 - 50 of 412

Oliver Stegle

Wellcome Sanger Institute

Career Start Year 2008

Number of shared co-authors 10

Altuna Akalin

Berlin Institute for Medical Systems Biology

Career Start Year 2006

Number of shared co-authors 1

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 3

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 8

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 8

Gerald Quon

University of California davis

Career Start Year 2003

Number of shared co-authors 3

Mikael Huss

Stockholm University

Career Start Year 2003

Number of shared co-authors 3

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 18

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 2

Zhandong Liu

Jan and Dan Duncan Neurological Research Institute at Texas Children's Hospital

Career Start Year 2003

Number of shared co-authors 3

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 4

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 3

Peter J Park

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 27

Rafael A Irizarry

Dana-Farber Cancer Institute

Career Start Year 2001

Number of shared co-authors 5

Mikhail G Dozmorov

Virginia Commonwealth University

Career Start Year 2001

Number of shared co-authors 1

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 9

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 2

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Career Start Year 1999

Number of shared co-authors 5

Kai Tan

University of Pennsylvania

Career Start Year 1999

Number of shared co-authors 0

Christina Kendziorski

University of Wisconsin-Madison

Career Start Year 1999

Number of shared co-authors 1

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 3

Mark D Robinson

University of Zurich

Career Start Year 1997

Number of shared co-authors 2

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 4

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 6

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 4

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 7

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 5

row(s) 1 - 30 of 30

Rui Jiang

Co-authored papers 14

Sheng Zhong

Peking-Tsinghua Center for Life Sciences, College of Life Sciences, Peking University

Co-authored papers 9

Yi Xing

Center for the Development of Therapeutics, Broad Institute of MIT and Harvard

Co-authored papers 9

Yan Cui

University of Tennessee Health Science Center

Co-authored papers 7

Alexander E Urban

Co-authored papers 7

Lynda Chin

Co-authored papers 7

Xuegong Zhang

Co-authored papers 6

Ke Hao

Co-authored papers 6

Eric E Schadt

Icahn School of Medicine at Mount Sinai

Co-authored papers 6

Karen Kapur

Co-authored papers 6

Mark Gerstein

Yale University

Co-authored papers 5

Haiyan Huang

Washington State University

Co-authored papers 5

Qiao Liu

Stanford University

Co-authored papers 5

Xianghong Jasmine Zhou

David Geffen School of Medicine, University of California at Los Angeles

Co-authored papers 5

Yonggang Zhou

David Geffen School of Medicine, University of California at Los Angeles

Co-authored papers 4

Keith L Ligon

Co-authored papers 4

Cameron Brennan

Co-authored papers 4

Wenyuan Li

Harvard Medical School

Co-authored papers 4

Howard Y Chang

Center for Personal Dynamic Regulomes, Stanford University

Co-authored papers 4

Alexej Abyzov

Co-authored papers 4

Junhee Seok

Korea University

Co-authored papers 3

Lei S Qi

Stanford University

Co-authored papers 3

William J Greenleaf

Stanford University

Co-authored papers 3

Ronald W Davis

Stanford University

Co-authored papers 3

Joachim Hallmayer

Stanford University School of Medicine

Co-authored papers 3

Li Cai

University of Texas MD Anderson Cancer Center

Co-authored papers 3

Edward B Garon

David Geffen School of Medicine, University of California Los Angeles

Co-authored papers 3

Yaoqi Alan Wang

The University of Texas MD Anderson Cancer Center

Co-authored papers 3

Xueqiu Lin

Co-authored papers 3

Steven M Dubinett

David Geffen School of Medicine at university of california los angeles

Co-authored papers 3

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators