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Author Details

Jeff Vierstra
Altius Institute for Biomedical Sciences
2012
25
19
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37425686GATA1-defective immune-megakaryocytes as possible drivers of idiopathic pulmonary fibrosis.bioRxiv2023
34815405Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation.Nat Commun2021
32728217Index and biological spectrum of human DNase I hypersensitive sites.Nature2020
32728250Global reference mapping of human transcription factor footprints.Nature2020
31161210eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.Bioinformatics2019
31360678Unbiased phenotypic identification of functionally distinct hematopoietic progenitors.J Biol Res (Thessalon)2019
30827930Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.EBioMedicine2019
30760496Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.J Am Soc Nephrol2019
26711113Erratum: Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2016
26914205Genomic footprinting.Nat Methods2016
25972927DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.Epigenetics Chromatin2015
26507798Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution.Genome Biol Evol2015
26322838Functional footprinting of regulatory DNA.Nat Methods2015
26502339Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.Nat Genet2015
25910208Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.Cell2015
24185839Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.Nat Methods2014
25411453Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution.Science2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25409825Conservation of trans-acting circuitry during mammalian regulatory evolution.Nature2014
23821440Genome-scale mapping of DNase I hypersensitivity.Curr Protoc Mol Biol2013
24115442An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level.Science2013
22576172BEDOPS: high-performance genomic feature operations.Bioinformatics2012
22955617The accessible chromatin landscape of the human genome.Nature2012
22955618An expansive human regulatory lexicon encoded in transcription factor footprints.Nature2012
22955981Personal and population genomics of human regulatory variation.Genome Res2012
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Collaborators

John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 21
Richard Sandstrom
Altius Institute for Biomedical Sciences
Co-authored papers 15
Alex P Reynolds
Altius Institute for Biomedical Sciences
Co-authored papers 12
Rajinder Kaul
Altius Institute for Biomedical Sciences
Co-authored papers 11
Eric Haugen
Altius Institute for Biomedical Sciences
Co-authored papers 11
Audra K Johnson
Altius Institute for Biomedical Sciences
Co-authored papers 9
Morgan Diegel
Altius Institute for Biomedical Sciences
Co-authored papers 9
Robert E Thurman
University of Washington
Co-authored papers 9
Douglas Dunn
Altius Institute for Biomedical Sciences
Co-authored papers 9
Eric Rynes
Altius Institute for Biomedical Sciences
Co-authored papers 8
Peter J Sabo
University of Washington
Co-authored papers 8
Kristen Lee
Altius Institute for Biomedical Sciences
Co-authored papers 8
Theresa K Canfield
University of Washington
Co-authored papers 7
Shane Neph
Altius Institute for Biomedical Sciences
Co-authored papers 7
Daniel Bates
Altius Institute for Biomedical Sciences
Co-authored papers 7
Matthew T Maurano
Institute for Systems Genetics, NYU School of Medicine
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R S Hansen
University of Washington
Co-authored papers 6
Shinny Vong
University of Washington
Co-authored papers 6
Fidencio Neri
Altius Institute for Biomedical Sciences
Co-authored papers 6
Richard Humbert
University of Washington
Co-authored papers 5
Erika Giste
University of Washington
Co-authored papers 5
Stuart H Orkin
Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School
Co-authored papers 4
Anthony Shafer
University of Washington
Co-authored papers 4
Sam John
National Cancer Institute
Co-authored papers 4
Hao Wang
Altius Institute for Biomedical Sciences
Co-authored papers 4
Andrew B Stergachis
University of Washington School of Medicine
Co-authored papers 4
Molly Weaver
University of Kentucky
Co-authored papers 3
Tanya Kutyavin
Altius Institute for Biomedical Sciences
Co-authored papers 3
Benjamin Vernot
Max Planck Institute for Evolutionary Anthropology
Co-authored papers 3
Piper M Treuting
University of Washington
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Release 1.2