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Author Details

Ali Bashir
Google Accelerated Science Team, Google Inc
2003
52
29
PMIDPaper TitleJournal TitlePublished Year
36539592Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation.Genes Immun2023
36539592Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation.Genes Immun2023
34195837NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.Gigascience2021
33574611Deep diversification of an AAV capsid protein by machine learning.Nat Biotechnol2021
33888692Machine learning guided aptamer refinement and discovery.Nat Commun2021
34195837NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.Gigascience2021
34397303Management of the penetrating atherosclerotic ulcer in the descending thoracic aorta.Asian Cardiovasc Thorac Ann2021
35005536ProtSeq: Toward high-throughput, single-molecule protein sequencing via amino acid conversion into DNA barcodes.iScience2021
33574611Deep diversification of an AAV capsid protein by machine learning.Nat Biotechnol2021
33888692Machine learning guided aptamer refinement and discovery.Nat Commun2021
35005536ProtSeq: Toward high-throughput, single-molecule protein sequencing via amino acid conversion into DNA barcodes.iScience2021
34397303Management of the penetrating atherosclerotic ulcer in the descending thoracic aorta.Asian Cardiovasc Thorac Ann2021
31397844MsPAC: a tool for haplotype-phased structural variant detection.Bioinformatics2020
31768029Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis.Nat Microbiol2020
32041753Successful pregnancy in a liver transplant patient of Budd-Chiari syndrome.BMJ Case Rep2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
33072076A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus.Front Immunol2020
31397844MsPAC: a tool for haplotype-phased structural variant detection.Bioinformatics2020
32041753Successful pregnancy in a liver transplant patient of Budd-Chiari syndrome.BMJ Case Rep2020
31768029Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis.Nat Microbiol2020
33072076A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus.Front Immunol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
31578260A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.J Clin Microbiol2019
31578260A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.J Clin Microbiol2019
29382336Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years.BMC Med Genomics2018
30061376Genome Plasticity of <i>agr</i>-Defective Staphylococcus aureus during Clinical Infection.Infect Immun2018
29382336Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years.BMC Med Genomics2018
30061376Genome Plasticity of <i>agr</i>-Defective Staphylococcus aureus during Clinical Infection.Infect Immun2018
28416712Comment on "A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data".J Immunol2017
28416712Comment on "A Database of Human Immune Receptor Alleles Recovered from Population Sequencing Data".J Immunol2017
28301471Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient.PLoS One2017
28301471Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient.PLoS One2017
27153570Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.Bioinformatics2016
27246310Impact of HCV core gene quasispecies on hepatocellular carcinoma risk among HALT-C trial patients.Sci Rep2016
27153570Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.Bioinformatics2016
27271295Extensive sequencing of seven human genomes to characterize benchmark reference materials.Sci Data2016
27271295Extensive sequencing of seven human genomes to characterize benchmark reference materials.Sci Data2016
27246310Impact of HCV core gene quasispecies on hepatocellular carcinoma risk among HALT-C trial patients.Sci Rep2016
25634025How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study.Genet Med2015
25847190Characterizing and Overriding the Structural Mechanism of the Quizartinib-Resistant FLT3 "Gatekeeper" F691L Mutation with PLX3397.Cancer Discov2015
25634025How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study.Genet Med2015
26434730Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.Microbiome2015
26432246An integrated map of structural variation in 2,504 human genomes.Nature2015
26264128Preparing the next generation of genomicists: a laboratory-style course in medical genomics.BMC Med Genomics2015
26510470Erratum to: Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.Microbiome2015
26121404Assembly and diploid architecture of an individual human genome via single-molecule technologies.Nat Methods2015
26324280Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.Antimicrob Agents Chemother2015
26434730Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.Microbiome2015
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Collaborators

Robert Sebra
Icahn School of Medicine at Mount Sinai
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Eric E Schadt
Icahn School of Medicine at Mount Sinai
Co-authored papers 14
Vineet Bafna
University of California San Diego
Co-authored papers 9
Benjamin J Raphael
Princeton University
Co-authored papers 7
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Icahn School of Medicine at Mount Sinai
Co-authored papers 6
Michael D Linderman
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Feil Family Brain and Mind Research Institute.
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University of Louisville School of Medicine
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University College London
Co-authored papers 4
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University of Southern California
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Bilkent University
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Vikas Bansal
University of California San Diego
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Xian Fan
Rice University
Co-authored papers 3
Noah Spies
Stanford University
Co-authored papers 3
Stephen T Sherry
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Iman Hajirasouliha
Institute for Computational Biomedicine
Co-authored papers 3
Anna Ritz
Reed College
Co-authored papers 3
Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 3
Evan E Eichler
University of Washington
Co-authored papers 3
Ryan E Mills
University of Michigan Medical School ann arbor
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Ken Chen
University of Texas MD Anderson Cancer Center
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Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
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