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| 36305680 | Polygenic risk of any, metastatic, and fatal prostate cancer in the Million Veteran Program. | J Natl Cancer Inst | 2023 |
| 36250634 | The Cancer Epitope Database and Analysis Resource (CEDAR). | Nucleic Acids Res | 2023 |
| 36305680 | Polygenic risk of any, metastatic, and fatal prostate cancer in the Million Veteran Program. | J Natl Cancer Inst | 2023 |
| 37945900 | Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma. | Nat Genet | 2023 |
| 37577681 | Interface-guided phenotyping of coding variants in the transcription factor RUNX1 with SEUSS. | bioRxiv | 2023 |
| 37637234 | Autoimmune HLA Alleles and Neoepitope Presentation Predict Post-Allogenic Transplant Relapse. | J Immunother Precis Oncol | 2023 |
| 36909826 | Transcriptional analysis links B cells and TERT expression to favorable prognosis in head and neck cancer. | PNAS Nexus | 2023 |
| 37085539 | 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. | Nat Commun | 2023 |
| 37461500 | Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains. | bioRxiv | 2023 |
| 36629482 | Response to Haiman, Kote-Jarai, Darst et al. | J Natl Cancer Inst | 2023 |
| 37308665 | The GPCR-Gα<sub>s</sub>-PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure. | Nat Immunol | 2023 |
| 37173324 | Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response. | Nat Commun | 2023 |
| 37945900 | Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma. | Nat Genet | 2023 |
| 37577681 | Interface-guided phenotyping of coding variants in the transcription factor RUNX1 with SEUSS. | bioRxiv | 2023 |
| 37637234 | Autoimmune HLA Alleles and Neoepitope Presentation Predict Post-Allogenic Transplant Relapse. | J Immunother Precis Oncol | 2023 |
| 37461500 | Epigenetic Germline Variants Predict Cancer Prognosis and Risk and Distribute Uniquely in Topologically Associating Domains. | bioRxiv | 2023 |
| 37085539 | 3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma. | Nat Commun | 2023 |
| 37308665 | The GPCR-Gα<sub>s</sub>-PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure. | Nat Immunol | 2023 |
| 37173324 | Germline modifiers of the tumor immune microenvironment implicate drivers of cancer risk and immunotherapy response. | Nat Commun | 2023 |
| 36909826 | Transcriptional analysis links B cells and TERT expression to favorable prognosis in head and neck cancer. | PNAS Nexus | 2023 |
| 36629482 | Response to Haiman, Kote-Jarai, Darst et al. | J Natl Cancer Inst | 2023 |
| 36250634 | The Cancer Epitope Database and Analysis Resource (CEDAR). | Nucleic Acids Res | 2023 |
| 34432150 | Predicting functional consequences of mutations using molecular interaction network features. | Hum Genet | 2022 |
| 36314681 | Subcellular location of source proteins improves prediction of neoantigens for immunotherapy. | EMBO J | 2022 |
| 35647109 | Assessment of Diversity of Antimicrobial Resistance Phenotypes and Genotypes of <i>Mannheimia haemolytica</i> Isolates From Bovine Nasopharyngeal Swabs. | Front Vet Sci | 2022 |
| 36151408 | Publisher Correction: Predicting functional consequences of mutations using molecular interaction network features. | Hum Genet | 2022 |
| 36575447 | Accurate genome-wide genotyping from archival tissue to explore the contribution of common genetic variants to pre-cancer outcomes. | J Transl Med | 2022 |
| 36494783 | PRState: Incorporating genetic ancestry in prostate cancer risk scores for men of African ancestry. | BMC Cancer | 2022 |
| 34432150 | Predicting functional consequences of mutations using molecular interaction network features. | Hum Genet | 2022 |
| 35647109 | Assessment of Diversity of Antimicrobial Resistance Phenotypes and Genotypes of <i>Mannheimia haemolytica</i> Isolates From Bovine Nasopharyngeal Swabs. | Front Vet Sci | 2022 |
| 36575447 | Accurate genome-wide genotyping from archival tissue to explore the contribution of common genetic variants to pre-cancer outcomes. | J Transl Med | 2022 |
| 36494783 | PRState: Incorporating genetic ancestry in prostate cancer risk scores for men of African ancestry. | BMC Cancer | 2022 |
| 36314681 | Subcellular location of source proteins improves prediction of neoantigens for immunotherapy. | EMBO J | 2022 |
| 36151408 | Publisher Correction: Predicting functional consequences of mutations using molecular interaction network features. | Hum Genet | 2022 |
| 33974857 | Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Cancer Cell | 2021 |
| 33914028 | Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Database (Oxford) | 2021 |
| 33952700 | Immune evasion in HPV<sup>-</sup> head and neck precancer-cancer transition is driven by an aneuploid switch involving chromosome 9p loss. | Proc Natl Acad Sci U S A | 2021 |
| 33571241 | In silico analysis suggests less effective MHC-II presentation of SARS-CoV-2 RBM peptides: Implication for neutralizing antibody responses. | PLoS One | 2021 |
| 34095869 | A phenotypically supervised single-cell analysis protocol to study within-cell-type heterogeneity of cultured mammalian cells. | STAR Protoc | 2021 |
| 33558336 | Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Cancer Res | 2021 |
| 33602823 | Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Proc Natl Acad Sci U S A | 2021 |
| 33974857 | Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma. | Cancer Cell | 2021 |
| 34465181 | Neoantigen Controversies. | Annu Rev Biomed Data Sci | 2021 |
| 34504503 | The Cancer Epitope Database and Analysis Resource: A Blueprint for the Establishment of a New Bioinformatics Resource for Use by the Cancer Immunology Community. | Front Immunol | 2021 |
| 34503567 | Non-cancer-related pathogenic germline variants and expression consequences in ten-thousand cancer genomes. | Genome Med | 2021 |
| 34493867 | Genomic and evolutionary classification of lung cancer in never smokers. | Nat Genet | 2021 |
| 33602823 | Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation. | Proc Natl Acad Sci U S A | 2021 |
| 33571241 | In silico analysis suggests less effective MHC-II presentation of SARS-CoV-2 RBM peptides: Implication for neutralizing antibody responses. | PLoS One | 2021 |
| 33558336 | Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response. | Cancer Res | 2021 |
| 33914028 | Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition. | Database (Oxford) | 2021 |