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Author Details

Seesandra V Rajagopala
Vanderbilt University Medical Center
2004
52
23
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37933740Mucosal Microbiome Disruption in Acute Laryngeal Injury Following Intubation.Otolaryngol Head Neck Surg2024
36687654Intestinal epithelial cell-derived components regulate transcriptome of <i>Lactobacillus rhamnosus</i> GG.Front Microbiol2023
37292825Idiopathic subglottic stenosis arises at the epithelial interface of host and pathogen.Res Sq2023
36820832Upper respiratory tract microbiota dynamics following COVID-19 in adults.Microb Genom2023
36656015Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load.J Virol2023
34315165Association between Oral Microbiome and Esophageal Diseases: A State-of-the-Art Review.Dig Dis2022
35438176Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality.Dis Model Mech2022
36195733Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats.Sci Rep2022
36052371Mucosal gene expression in response to SARS-CoV-2 is associated with early viral load.bioRxiv2022
35141167Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome.Front Cell Infect Microbiol2022
34790908Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples.Cell Rep Methods2021
33863395Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats.Anim Microbiome2021
33577896SARS-CoV-2 infection and viral load are associated with the upper respiratory tract microbiome.J Allergy Clin Immunol2021
33244064Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes.Sci Rep2020
31754744Persistent Gut Microbial Dysbiosis in Children with Acute Lymphoblastic Leukemia (ALL) During Chemotherapy.Microb Ecol2020
31107724The Salivary Microbiome Is Altered in Children With Eosinophilic Esophagitis and Correlates With Disease Activity.Clin Transl Gastroenterol2019
31699753Nearly Complete Genome Sequences of 17 Enterovirus D68 Strains from Kansas City, Missouri, 2018.Microbiol Resour Announc2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
30054492Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection.Sci Rep2018
28819457Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function.Theranostics2017
28096237The Human Microbiome and Cancer.Cancer Prev Res (Phila)2017
29176882Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.PLoS One2017
28904337Toxoplasma Modulates Signature Pathways of Human Epilepsy, Neurodegeneration &amp; Cancer.Sci Rep2017
28744484The Protein Interactome of <i>Streptococcus pneumoniae</i> and Bacterial Meta-interactomes Improve Function Predictions.mSystems2017
27527070Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis.BMC Genomics2016
27814404Enterovirus D-68 Infection, Prophylaxis, and Vaccination in a Novel Permissive Animal Model, the Cotton Rat (Sigmodon hispidus).PLoS One2016
25738731Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms.PLoS Comput Biol2015
26621469Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens.Adv Exp Med Biol2015
26714771Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.BMC Genomics2015
24627523A second-generation protein-protein interaction network of Helicobacter pylori.Mol Cell Proteomics2014
24803519Chromosome segregation proteins of Vibrio cholerae as transcription regulators.mBio2014
24561554The binary protein-protein interaction landscape of Escherichia coli.Nat Biotechnol2014
23800426Novel Burkholderia mallei virulence factors linked to specific host-pathogen protein interactions.Mol Cell Proteomics2013
24049175The protein interaction network of bacteriophage lambda with its host, Escherichia coli.J Virol2013
22218851Matrix-based yeast two-hybrid screen strategies and comparison of systems.Methods Mol Biol2012
22841565Studying protein complexes by the yeast two-hybrid system.Methods2012
22218852Array-based yeast two-hybrid screens: a practical guide.Methods Mol Biol2012
21877274Analysis of protein-protein interactions using high-throughput yeast two-hybrid screens.Methods Mol Biol2011
21943085The protein interaction map of bacteriophage lambda.BMC Microbiol2011
20805792Exhaustive benchmarking of the yeast two-hybrid system.Nat Methods2010
20701780The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.BMC Genomics2010
19521828Analysis of protein-protein interactions using array-based yeast two-hybrid screens.Methods Mol Biol2009
19730696Evolutionarily conserved herpesviral protein interaction networks.PLoS Pathog2009
19834901Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins.Proteomics2009
18509523The binary protein interactome of Treponema pallidum--the syphilis spirochete.PLoS One2008
18786976MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions.Bioinformatics2008
18556668MPIDB: the microbial protein interaction database.Bioinformatics2008
17667950The protein network of bacterial motility.Mol Syst Biol2007
16339411Herpesviral protein networks and their interaction with the human proteome.Science2006
16936039Novel conserved assembly factor of the bacterial flagellum.J Bacteriol2006
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Collaborators

Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 23
Bjoern Titz
university of california los angeles
Co-authored papers 6
Roman Hauser
SSSSGerman Cancer Research Center
Co-authored papers 6
Bronson C Wessinger
12328Vanderbilt University Medical Center
Co-authored papers 5
Shibu Yooseph
University of Central Florida
Co-authored papers 5
Andrey Tovchigrechko
J. Craig Venter Institute, 9605 Medical Center Dr
Co-authored papers 5
Stefan Wuchty
University of Miami
Co-authored papers 5
Johannes B Goll
.The Emmes Corporation
Co-authored papers 4
Karen E Nelson
J. Craig Venter Institute, 9605 Medical Center Drive
Co-authored papers 4
Thorsten Stellberger
University Clinic for Swine, University of Veterinary Medicine Vienna
Co-authored papers 4
Tina V Hartert
Vanderbilt University Medical Center
Co-authored papers 3
Patricia Sikorski
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
J??rgen Haas
University of Edinburgh
Co-authored papers 3
Yu-An Dong
Germany Institute of Systems Biology, Shanghai University
Co-authored papers 3
Even Fossum
Oslo University Hospital
Co-authored papers 2
Mohan Babu
University of Regina
Co-authored papers 2
Sadhna Phanse
University of Regina
Co-authored papers 2
Armin Baiker
Center for Biomedical Education and Research (ZBAF), Witten/Herdecke University
Co-authored papers 2
Arnaud Ceol
European Institute of Oncology IRCCS
Co-authored papers 2
Patrick Aloy
Institucio Catalana de Recerca i Estudis Avancats (ICREA)
Co-authored papers 2
Russell L Finley
Center for Molecular Medicine & Genetics, Wayne State University School of Medicine
Co-authored papers 2
Hirotada Mori
Nara Institute of Science and Technology
Co-authored papers 2
Dietlind Rose
Co-authored papers 2
Keri B Zabokrtsky
Co-authored papers 2
Andrew Emili
Boston University School of Medicine, Boston University
Co-authored papers 2
Leonard S Sender
Co-authored papers 2
Christine Zeretzke
Co-authored papers 2
Jonathan Franca-Koh
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Release 1.2