Author details

Full Name

John F Marko

Affiliation

ORCID

Career Start Year

1988

Papers

162

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36119136	A Versatile Micromanipulation Apparatus for Biophysical Assays of the Cell Nucleus.	Cellular and Molecular Bioengineering	2022
35474142	DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations.	Nucleic Acids Research	2022
33838135	Single-molecule micromanipulation studies of methylated DNA.	Biophysical Journal	2021
34279217	High-resolution, genome-wide mapping of positive supercoiling in chromosomes.	Elife	2021
33574602	Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics.	Nat Genet	2021
34106828	HP1Î± is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics.	Elife	2021
32999386	Micromanipulation of prophase I chromosomes from mouse spermatocytes reveals high stiffness and gel-like chromatin organization.	Communications Biology	2020
32250245	Chromosome organization by one-sided and two-sided loop extrusion.	eLife	2020
31866291	Physics and Biology (of Chromosomes).	Journal of Molecular Biology	2020
33045724	Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches.	Nucleic Acids Research	2020
33301731	The Smc5/6 Core Complex Is a Structure-Specific DNA Binding and Compacting Machine.	Molecular Cell	2020
30889417	Chromatin's physical properties shape the nucleus and its functions.	Current Opinion in Cell Biology	2019
31586479	How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation.	Current Opinion in Chemical Biology	2019
31757850	Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures.	Proceedings of the National Academy of Sciences of the United States of America	2019
30625026	Effects of altering histone posttranslational modifications on mitotic chromosome structure and mechanics.	Molecular Biology of the Cell	2019
31175837	DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes.	Nucleic Acids Research	2019
31029377	Receptor-Ligand Rebinding Kinetics in Confinement.	Biophysical Journal	2019
30971691	Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm.	Nature Communications	2019
31216230	Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation.	Molecular Biology of the Cell	2019
31365328	Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation.	Molecular Biology of the Cell	2019
30999490	Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.	Physical Review E	2019
29548184	Defect-facilitated buckling in supercoiled double-helix DNA.	Physical Review E	2018
30143891	Condensin controls mitotic chromosome stiffness and stability without forming a structurally contiguous scaffold.	Chromosome Research	2018
30192578	Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.	Physical Review Letters	2018
30368746	DNA Mechanics and Topology.	Advances in Experimental Medicine and Biology	2018
29142071	Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins.	Molecular Biology of the Cell	2018
29227210	Separate roles for chromatin and lamins in nuclear mechanics.	Nucleus	2018
29177739	Single-Molecule Magnetic Tweezer Analysis of Topoisomerases.	Methods in Molecular Biology	2018
29548245	Effects of electrostatic interactions on ligand dissociation kinetics.	Physical Review E	2018
28057760	Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus.	Molecular Biology of the Cell	2017
28414321	An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases.	Nature Structural and Molecular Biology	2017
28618488	Torque and buckling in stretched intertwined double-helix DNAs.	Physical Review E	2017
28570602	A comparison of nucleosome organization in Drosophila cell lines.	PLoS ONE	2017
28364020	Facilitated dissociation of transcription factors from single DNA binding sites.	Proceedings of the National Academy of Sciences of the United States of America	2017
29053317	Supercoiling DNA Locates Mismatches.	Physical Review Letters	2017
29045860	Mechanics and Buckling of Biopolymeric Shells and Cell Nuclei.	Biophysical Journal	2017
29219598	Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices.	Physical Review Letters	2017
29079757	Oligomerization and ATP stimulate condensin-mediated DNA compaction.	Scientific Reports	2017
27550179	Crossover-site sequence and DNA torsional stress control strand interchanges by the Bxb1 site-specific serine recombinase.	Nucleic Acids Res	2016
27296635	An assay for 26S proteasome activity based on fluorescence anisotropy measurements of dye-labeled protein substrates.	Analytical Biochemistry	2016
26843321	Role of transcription factor-mediated nucleosome disassembly in PHO5 gene expression.	Scientific Reports	2016
27192037	Compaction and segregation of sister chromatids via active loop extrusion.	eLife	2016
27145786	Dependence of the structure and mechanics of metaphase chromosomes on oxidized cysteines.	Chromosome Research	2016
27182590	Erratum: Torque correlation length and stochastic twist dynamics of DNA [Phys. Rev. E 89, 062706 (2014)].	Physical Review E	2016
26871126	Self-propulsion and interactions of catalytic particles in a chemically active medium.	Physical Review E	2016
27224481	Chromosome Compaction by Active Loop Extrusion.	Biophysical Journal	2016
27044624	Facilitated Dissociation of a Nucleoid Protein from the Bacterial Chromosome.	Journal of Bacteriology	2016
27362225	Cell division: A sticky problem for chromosomes.	Nature	2016
27032966	Controlled rotation mechanism of DNA strand exchange by the Hin serine recombinase.	Scientific Reports	2016
26940551	Corrigendum: Role of transcription factor-mediated nucleosome disassembly in PHO5 gene expression.	Scientific Reports	2016