Author details

Full Name

Masako Suzuki

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37118773	An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.		2023
37777968	Early-life stress and ovarian hormones alter transcriptional regulation in the nucleus accumbens resulting in sex-specific responses to cocaine.		2023
36698218	Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation.		2023
35235365	Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis.	Science advances	2022
35571879	Genetic Variations of Vitamin A-Absorption and Storage-Related Genes, and Their Potential Contribution to Vitamin A Deficiency Risks Among Different Ethnic Groups.	Frontiers in Nutrition	2022
33775205	Cell type-specific chromatin accessibility analysis in the mouse and human brain.	Epigenetics	2022
34872606	The SEQC2 epigenomics quality control (EpiQC) study.	Genome Biol	2021
34063790	Disproportionate Vitamin A Deficiency in Women of Specific Ethnicities Linked to Differences in Allele Frequencies of Vitamin A-Related Polymorphisms.	Nutrients	2021
34737344	Premature differentiation of nephron progenitor cell and dysregulation of gene pathways critical to kidney development in a model of preterm birth.	Scientific Reports	2021
34949218	Author Correction: The SEQC2 epigenomics quality control (EpiQC) study.	Genome Biol	2021
33371881	The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.	BMC Bioinformatics	2020
32255672	Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways.	American Journal of Respiratory and Critical Care Medicine	2020
33560917	A Cellular Stress Response Induced by the CRISPR-dCas9 Activation System Is Not Heritable Through Cell Divisions.	CRISPR Journal	2020
30988422	Engineering a haematopoietic stem cell niche by revitalizing mesenchymal stromal cells.	Nat Cell Biol	2019
30702441	Ascorbic acid-induced TET activation mitigates adverse hydroxymethylcytosine loss in renal cell carcinoma.	J Clin Invest	2019
31022271	Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data.	PLoS ONE	2019
31428700	High-efficiency genomic editing in Epstein-Barr virus-transformed lymphoblastoid B cells using a single-stranded donor oligonucleotide strategy.	Communications Biology	2019
31253786	Chromatin organization in the female mouse brain fluctuates across the oestrous cycle.	Nature Communications	2019
31375681	Functional genetic variants can mediate their regulatory effects through alteration of transcription factor binding.	Nature Communications	2019
29773658	Detecting, quantifying, and discriminating the mechanism of mosaic chromosomal aneuploidies using MAD-seq.	Genome Res	2018
30173819	Fetal-Not Maternal-APOL1 Genotype Associated with Risk for Preeclampsia in Those with African Ancestry.	Am J Hum Genet	2018
30061308	Mechanisms of establishment and functional significance of DNA demethylation during erythroid differentiation.	Blood Adv	2018
30093547	Whole-genome bisulfite sequencing with improved accuracy and cost.	Genome Res	2018
30560927	Interleukin 2 modulates thymic-derived regulatory T cell epigenetic landscape.	Nat Commun	2018
29747586	Selective modulation of local linkages between active transcription and oxidative demethylation activity shapes cardiomyocyte-specific gene-body epigenetic status in mice.	BMC Genomics	2018
29598691	Intrauterine Hyperglycemia Is Associated with an Impaired Postnatal Response to Oxidative Damage.		2018
27909050	Notch Pathway Is Activated via Genetic and Epigenetic Alterations and Is a Therapeutic Target in Clear Cell Renal Cancer.	J Biol Chem	2017
28911167	In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice.	Endocrinology	2017
28986391	Altered hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways.	Genome Res	2017
28629478	Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era.		2017
26871472	Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis.	Oncotarget	2016
27293492	Amnion as a surrogate tissue reporter of the effects of maternal preeclampsia on the fetus.	Clinical Epigenetics	2016
26683690	Genome Wide Methylome Alterations in Lung Cancer.	PLoS ONE	2015
25813045	Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.	Nucleic Acids Research	2015
25806086	DNA demethylation by 5-aza-2'-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences.	Epigenetics and Chromatin	2015
24875834	Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder.	PLoS Genet	2014
24916699	Kidney cancer is characterized by aberrant methylation of tissue-specific enhancers that are prognostic for overall survival.	Clin Cancer Res	2014
24947998	DNA methylation is developmentally regulated for genes essential for cardiogenesis.	J Am Heart Assoc	2014
23066032	Methylome profiling reveals distinct alterations in phenotypic and mutational subgroups of myeloproliferative neoplasms.	Cancer Res	2013
23861445	Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.	Nucleic Acids Res	2013
23861320	Large, male germ cell-specific hypomethylated DNA domains with unique genomic and epigenomic features on the mouse X chromosome.	DNA Research	2013
23857381	Differential epigenome-wide DNA methylation patterns in childhood obesity-associated asthma.	Scientific Reports	2013
24098934	Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development.	Genome Biol	2013
23754746	Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes.	Mol Cell Biol	2013
24367978	Lsh regulates LTR retrotransposon repression independently of Dnmt3b function.	Genome Biol	2013
23531360	Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.	Genome Biol	2013
23306203	High resolution methylome analysis reveals widespread functional hypomethylation during adult human erythropoiesis.	J Biol Chem	2013
23507485	Genome-wide DNA methylation analysis using massively parallel sequencing technologies.	Seminars in Hematology	2013
23333711	Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma.	Gastroenterology	2013
23408834	Myeloma is characterized by stage-specific alterations in DNA methylation that occur early during myelomagenesis.	Journal of Immunology	2013