Author details

Full Name

Shaoke Lou

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37410793	Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes.	PLoS Comput Biol	2023
33792640	Gene Tracer: a smart, interactive, voice-controlled Alexa skill For gene information retrieval and browsing, mutation annotation and network visualization.	Bioinformatics	2021
32657410	TopicNet: a framework for measuring transcriptional regulatory network change.	Bioinformatics	2020
32084333	Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.	Cell	2020
32571363	Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients.	Genome Biol	2020
32728046	An integrative ENCODE resource for cancer genomics.	Nat Commun	2020
32615918	DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.	BMC Bioinformatics	2020
32727537	RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins.	Genome Biol	2020
31469829	GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner.	PLoS Genet	2019
31279629	Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.	Structure	2019
30545857	Comprehensive functional genomic resource and integrative model for the human brain.	Science	2018
28742097	MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.	PLoS Comput Biol	2017
26856934	Integrative Genomic Analyses Yield Cell-Cycle Regulatory Programs with Prognostic Value.	Mol Cancer Res	2016
27009100	The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
27125642	Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.	Genome Biol	2016
25996148	Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer.	PLoS Comput Biol	2015
25881247	Integrative analysis of survival-associated gene sets in breast cancer.	BMC Med Genomics	2015
25074712	Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation.	Genome Biol	2014
25273974	FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer.	Genome Biol	2014
21988959	Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length.	BMC Bioinformatics	2011
21445457	Combined in vivo imaging and omics approaches reveal metabolism of icaritin and its glycosides in zebrafish larvae.	Mol Biosyst	2011
21169377	ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping.	Bioinformatics	2011
21909574	Transcriptional profiling of angiogenesis activities of calycosin in zebrafish.	Mol Biosyst	2011
20576098	An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database).	BMC Genomics	2010
16882623	Microarray analysis of differentially expressed genes in mouse bone marrow tissues after ionizing radiation.	International Journal of Radiation Biology	2006
16526963	Selection of antisense oligonucleotides based on multiple predicted target mRNA structures.	BMC Bioinformatics	2006
16381954	AOBase: a database for antisense oligonucleotides selection and design.	Nucleic Acids Research	2006