Author details

Full Name

Lydie Bougueleret

Affiliation

carnegie mellon university

ORCID

Career Start Year

1979

Papers

H Index

Expertise

CM4AI Collaborator

Timothy Clark (CM4AI)

PMID	Paper Title	Journal Title	Published Year
27789701	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
28207819	The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection.	PLoS One	2017
28545254	Bacterial Virus Ontology; Coordinating across Databases.	Viruses	2017
27980062	Updates in Rhea - an expert curated resource of biochemical reactions.	Nucleic Acids Res	2017
26519399	UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View.	Methods Mol Biol	2016
25332395	Updates in Rhea--a manually curated resource of biochemical reactions.	Nucleic Acids Res	2015
25943471	The SwissLipids knowledgebase for lipid biology.	Bioinformatics	2015
25348399	HAMAP in 2015: updates to the protein family classification and annotation system.	Nucleic Acids Res	2015
24848695	Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation.	Hum Mutat	2014
25233094	An integrated ontology resource to explore and study host-virus relationships.	PLoS One	2014
24792157	Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.	Nucleic Acids Res	2014
23161676	New and continuing developments at PROSITE.	Nucleic Acids Res	2013
23505298	pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.	Bioinformatics	2013
23517090	Application of text-mining for updating protein post-translational modification annotation in UniProtKB.	BMC Bioinformatics	2013
23193299	ViralZone: recent updates to the virus knowledge resource.	Nucleic Acids Res	2013
23193261	HAMAP in 2013, new developments in the protein family classification and annotation system.	Nucleic Acids Res	2013
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
22123736	The UniProt-GO Annotation database in 2011.	Nucleic Acids Res	2012
22465017	The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data.	Toxicon	2012
22281772	Toward interoperable bioscience data.	Nat Genet	2012
22135291	Rhea--a manually curated resource of biochemical reactions.	Nucleic Acids Res	2012
22102589	UniPathway: a resource for the exploration and annotation of metabolic pathways.	Nucleic Acids Res	2012
20947564	ViralZone: a knowledge resource to understand virus diversity.	Nucleic Acids Res	2011
20624713	OpenFluDB, a database for human and animal influenza virus.	Database (Oxford)	2010
22069583	Animal Toxins: How is Complexity Represented in Databases?	Toxins (Basel)	2010
18849571	HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.	Nucleic Acids Res	2009
20157489	Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase.	Database (Oxford)	2009
19084081	The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program.	J Proteomics	2009
15759310	Effective depletion of albumin using a new peptide-based affinity medium.	Proteomics	2005
15649059	Differential proteomics via probabilistic peptide identification scores.	Anal Chem	2005
15707372	Experiments in searching small proteins in unannotated large eukaryotic genomes.	J Proteome Res	2005
15274127	In vitro and in silico processes to identify differentially expressed proteins.	Proteomics	2004
15221774	Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins.	Proteomics	2004
15221758	High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.	Proteomics	2004
10224102	Molecular cloning of a lipolysis-stimulated remnant receptor expressed in the liver.	J Biol Chem	1999
9480757	CAG/CTG and CGG/GCC repeats in human brain reference cDNAs: outcome in searching for new dynamic mutations.	Genomics	1998
8632996	Isolation of 10 differentially expressed cDNAs in p53-induced apoptosis: activation of the vertebrate homologue of the drosophila seven in absentia gene.	Proc Natl Acad Sci U S A	1996
8817338	Survey of CAG/CTG repeats in human cDNAs representing new genes: candidates for inherited neurological disorders.	Hum Mol Genet	1996
8799150	Activation of the human homologue of the Drosophila sina gene in apoptosis and tumor suppression.	Proc Natl Acad Sci U S A	1996
8035824	E-box- and MEF-2-independent muscle-specific expression, positive autoregulation, and cross-activation of the chicken MyoD (CMD1) promoter reveal an indirect regulatory pathway.	Mol Cell Biol	1994
8432524	Characterization and chromosomal assignment of a human cDNA encoding a protein related to the murine 102-kDa cadherin-associated protein (alpha-catenin).	Genomics	1993
8499947	Dense Alu clustering and a potential new member of the NF kappa B family within a 90 kilobase HLA class III segment.	Nat Genet	1993
1690334	K-tuple frequency analysis: from intron/exon discrimination to T-cell epitope mapping.	Methods Enzymol	1990
2161049	Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains.	J Gen Virol	1990
2205804	Frequent activation of N-myc genes by hepadnavirus insertion in woodchuck liver tumours.	Nature	1990
2536918	Structure and expression of hcr, a locus rearranged with c-myc in a woodchuck hepatocellular carcinoma.	Oncogene	1989
2665768	Implications of a Fab-like structure for the T-cell receptor.	Immunol Today	1989
2826820	Rearrangement of a common cellular DNA domain on chromosome 4 in human primary liver tumors.	J Virol	1988
3353220	Objective comparison of exon and intron sequences by means of 2-dimensional data analysis methods.	Nucleic Acids Res	1988
2461306	T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein.	Eur J Immunol	1988

1 - 50 of 65

Adam Pavlicek

Monoceros Biosystems LLC

Career Start Year 1998

Number of shared co-authors 0

Krzysztof Paw??owski

Kashubian Center for Heart and Vascular Diseases in Wejherowo, Pomeranian Hospitals

Career Start Year 1996

Number of shared co-authors 0

Stefano Toppo

University of Padova

Career Start Year 1996

Number of shared co-authors 13

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1995

Number of shared co-authors 88

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 21

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 0

Jaap Heringa

VU University Amsterdam

Career Start Year 1991

Number of shared co-authors 8

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 2

Chris P Ponting

The University of Edinburgh

Career Start Year 1989

Number of shared co-authors 8

Mark D Adams

Case Western Reserve University School of Medicine

Career Start Year 1989

Number of shared co-authors 9

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 35

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 7

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 5

Mauno Vihinen

Lund University

Career Start Year 1987

Number of shared co-authors 7

Denis C Shields

Conway Institute of Biomolecular and Biomedical Research, University College Dublin

Career Start Year 1987

Number of shared co-authors 5

Michal Linial

Institute of Life Sciences, The Hebrew University of Jerusalem

Career Start Year 1986

Number of shared co-authors 13

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 29

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 13

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 24

Mathias Uhl??n

KTH Royal Institute of Technology

Career Start Year 1981

Number of shared co-authors 8

Enrique Querol

Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona

Career Start Year 1980

Number of shared co-authors 0

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 14

Marie-Dominique Devignes

Universite de Lorraine, CNRS

Career Start Year 1979

Number of shared co-authors 8

Claire M Fraser

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 1979

Number of shared co-authors 11

Anthony R Kerlavage

National Cancer Institute

Career Start Year 1979

Number of shared co-authors 4

Charles Auffray

European Institute for Systems Biology and Medicine

Career Start Year 1978

Number of shared co-authors 14

Gianni Cesareni

University of Rome 'Tor Vergata'

Career Start Year 1976

Number of shared co-authors 22

William R Pearson

University of Virginia

Career Start Year 1974

Number of shared co-authors 0

Shoba Ranganathan

Macquarie University

Career Start Year 1972

Number of shared co-authors 19

Leroy Hood

Center for Phenomic Health, The Buck Institute for Research on Aging

Career Start Year 1961

Number of shared co-authors 3

row(s) 1 - 30 of 30

Ioannis Xenarios

University of Lausanne

Co-authored papers 25

Alan Bridge

carnegie mellon university

Co-authored papers 17

Sylvain Poux

carnegie mellon university

Co-authored papers 11

Elisabeth Coudert

Centre Medical Universitaire

Co-authored papers 11

Philippe Le Mercier

carnegie mellon university

Co-authored papers 10

Amos Bairoch

University of Geneva

Co-authored papers 9

Edouard de Castro

Co-authored papers 9

Kristian B Axelsen

Centre Medical Universitaire

Co-authored papers 8

Chantal Hulo

carnegie mellon university

Co-authored papers 8

Andrea H Auchincloss

carnegie mellon university

Co-authored papers 8

Guillaume Keller

carnegie mellon university

Co-authored papers 7

Anne Niknejad

University of Lausanne

Co-authored papers 7

Patrick Masson

carnegie mellon university

Co-authored papers 7

Catherine Rivoire

carnegie mellon university

Co-authored papers 6

Nicole Redaschi

Co-authored papers 6

Damien Lieberherr

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Co-authored papers 5

Anne Morgat

Centre Medical Universitaire

Co-authored papers 5

Michael Tognolli

Centre Medical Universitaire

Co-authored papers 5

Emmanuel Boutet

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Co-authored papers 5

Ivo Pedruzzi

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Co-authored papers 5

Florence Jungo

Centre Medical Universitaire

Co-authored papers 5

Michel Schneider

Centre Medical Universitaire

Co-authored papers 5

Lucila Aimo

Centre Medical Universitaire

Co-authored papers 4

Nevila Hyka-Nouspikel

Centre Medical Universitaire

Co-authored papers 4

Anne Estreicher

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Co-authored papers 4

Jane Lomax

Wellcome Sanger Institute

Co-authored papers 3

Arnaud Gos

Centre Medical Universitaire

Co-authored papers 3

Janet James

Co-authored papers 3

Marco Pagni

Co-authored papers 3

Christoph Steinbeck

Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena

Co-authored papers 3

1 - 30

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